Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.91□□□□□ -1.94
NKX3-1Q99801 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC092447.7-201ENST00000422212 1621 ntBASIC2.9□□□□□ -1.94
NKX3-1Q99801 SNORA63.1-201ENST00000362493 131 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 RNU1-70P-201ENST00000362618 164 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 SNORD56.2-201ENST00000363242 71 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 RNA5SP50-201ENST00000363731 107 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 U3.11-201ENST00000364476 212 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 RNU6-259P-201ENST00000383999 107 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 Y_RNA.582-201ENST00000391023 95 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 RN7SKP140-201ENST00000411196 284 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC091390.3-201ENST00000426478 338 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 ATP5JP1-201ENST00000431631 322 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 MTCO3P5-201ENST00000433620 714 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC093156.1-201ENST00000440382 670 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC008264.1-201ENST00000447612 367 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC021205.2-201ENST00000480069 347 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 RN7SKP13-201ENST00000515933 244 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 RNU1-143P-201ENST00000516296 146 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 SCARNA24.1-201ENST00000516465 137 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 SNORA64.4-201ENST00000516632 81 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 NRON-201ENST00000517270 370 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 MTCO2P4-201ENST00000517968 247 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 OR5B10P-201ENST00000532869 642 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 MGST1-215ENST00000540056 546 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC004024.1-201ENST00000549244 247 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC128657.1-201ENST00000549459 145 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC073648.5-201ENST00000603502 305 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AP002826.1-201ENST00000608835 315 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC109347.2-201ENST00000610220 349 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 U1.23-201ENST00000610293 146 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 SDR42E1P2-201ENST00000614861 481 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 RNU1-68P-201ENST00000615382 146 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 AC072046.2-201ENST00000618366 268 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 U1.39-201ENST00000621562 146 ntBASIC2.9□□□□□ -1.95
NKX3-1Q99801 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.9□□□□□ -1.95
NKX3-1Q99801 MTND5P26-201ENST00000426018 1752 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC017071.1-201ENST00000564407 2204 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNU4-35P-201ENST00000362588 141 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNU6-188P-201ENST00000364207 107 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RN7SKP226-201ENST00000364912 300 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 Y_RNA.333-201ENST00000365274 102 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNU6-701P-201ENST00000384059 107 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNA5SP44-201ENST00000410446 133 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNU2-8P-201ENST00000410727 190 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 MTCO1P21-201ENST00000416634 589 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 SYF2P2-201ENST00000417620 583 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RPL27AP8-201ENST00000424277 446 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL359385.1-201ENST00000456509 365 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 SNORD105B-201ENST00000458770 79 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RPL21P10-201ENST00000463521 490 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 RPS27AP1-201ENST00000475545 471 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC092185.1-201ENST00000491371 97 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 RNU1-61P-201ENST00000516107 151 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 HMGB1P41-201ENST00000520234 440 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC100870.1-201ENST00000522035 505 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
NKX3-1Q99801 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 NACA-211ENST00000548563 827 ntTSL 5 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC087883.1-201ENST00000551882 391 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AC055876.1-202ENST00000567053 138 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 NRBF2P1-201ENST00000587407 859 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 GLUD1P4-201ENST00000590914 418 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL136363.2-201ENST00000604173 851 ntBASIC2.89□□□□□ -1.95
NKX3-1Q99801 AL022154.1-201ENST00000604698 785 ntBASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms