Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 AC010680.1-201ENST00000590024 3590 ntBASIC2.33□□□□□ -2.04
CCDC54Q8NEL0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC008669.1-201ENST00000565823 2178 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 U3.20-201ENST00000390909 217 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 TPMTP3-201ENST00000411928 735 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 RPS12P2-201ENST00000439728 269 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC009296.1-201ENST00000443146 155 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC009237.8-201ENST00000445492 379 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC092798.1-201ENST00000458542 409 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AL672167.3-201ENST00000465951 960 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 RPL7P49-201ENST00000471402 708 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 FAM172BP-201ENST00000487497 1089 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC055855.1-201ENST00000489563 579 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC104685.1-201ENST00000502445 371 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AL133153.1-201ENST00000557756 303 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 MTATP6P24-201ENST00000576835 677 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AL353778.1-201ENST00000603149 408 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 TUSC7.1-201ENST00000610969 165 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC104237.2-201ENST00000612456 443 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC034102.8-201ENST00000615146 484 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AP002791.1-201ENST00000623291 381 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 AC092192.1-201ENST00000633154 1018 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
CCDC54Q8NEL0 ZNF271P-202ENST00000465539 1970 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 UBA52P6-201ENST00000399822 382 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL590084.2-201ENST00000401481 382 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RNU6-193P-201ENST00000410977 107 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RN7SKP140-201ENST00000411196 284 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RNU6-516P-201ENST00000411381 104 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC099548.1-201ENST00000421443 426 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 XKRYP1-201ENST00000423438 492 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL593851.1-201ENST00000426171 157 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC008850.1-201ENST00000427546 362 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC087499.2-201ENST00000432861 149 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 XKRYP2-201ENST00000432915 492 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RPS15AP7-201ENST00000439294 405 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL714022.1-201ENST00000439897 151 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 GDI2P2-201ENST00000445131 608 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL671855.1-201ENST00000446875 1203 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 ANKRD26P4-201ENST00000455755 950 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 BX510359.1-201ENST00000456973 237 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC116337.2-201ENST00000477662 156 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RPS15AP36-201ENST00000492022 382 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 SNORA74D-201ENST00000516404 141 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 EEF1A1P37-201ENST00000522748 715 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC007954.1-201ENST00000554198 494 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 HMGB1P6-201ENST00000569046 646 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 MYL12BP1-201ENST00000569826 507 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 MIR4635-201ENST00000583759 79 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 MIR4293-201ENST00000584305 78 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 RNU6-88P-201ENST00000606801 100 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC072039.2-201ENST00000608883 439 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC108747.1-201ENST00000609508 535 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC011890.2-201ENST00000613393 294 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AL031667.3-201ENST00000620124 655 ntBASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.31□□□□□ -2.04
CCDC54Q8NEL0 AC017037.3-201ENST00000625016 472 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms