Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PGBD4P6-201ENST00000421501 610 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AL590632.1-201ENST00000424289 371 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC007389.2-201ENST00000434630 306 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 RPL12P3-201ENST00000440080 396 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 HMGB3P22-202ENST00000451823 572 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AURKAPS2-201ENST00000454983 333 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 SNRPGP3-201ENST00000469405 227 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC128713.1-201ENST00000471495 306 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 PPIAP15-201ENST00000479662 484 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.718-201ENST00000517110 102 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP340-201ENST00000517132 107 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC109479.2-201ENST00000517842 174 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 IGBP1P1-201ENST00000554337 1009 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AL442663.2-201ENST00000554385 511 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 H3F3AP1-201ENST00000559984 334 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC008121.1-201ENST00000603244 268 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AL133215.3-201ENST00000609801 448 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AC012531.5-201ENST00000611375 151 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 CU639417.4-201ENST00000623928 207 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 SCARNA4-202ENST00000625402 129 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 MTND5P7-201ENST00000413558 1798 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 HSPA8P1-201ENST00000425843 1833 ntBASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CLRN3Q8NCR9 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RNU6-884P-201ENST00000363889 107 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.419-201ENST00000384041 102 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RNU1-89P-201ENST00000384592 164 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RNU6-658P-201ENST00000384606 106 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MIR1203-201ENST00000408812 85 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RPL17P36-201ENST00000420302 549 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC007677.1-201ENST00000445757 515 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 GAPDHP25-201ENST00000447061 1001 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC022215.1-201ENST00000481770 362 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC008897.1-201ENST00000494006 347 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 UBE2CP3-201ENST00000502715 450 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.667-201ENST00000516212 107 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RNU6-1183P-201ENST00000517054 60 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC104576.1-201ENST00000524225 88 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC209154.1-201ENST00000582156 337 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC123912.5-201ENST00000605470 343 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AC008962.1-201ENST00000605729 304 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 AL096712.1-201ENST00000614561 159 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MTND4LP32-201ENST00000636111 270 ntBASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CLRN3Q8NCR9 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP477-201ENST00000362639 119 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-37P-201ENST00000362692 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-11P-201ENST00000364234 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-7-201ENST00000364784 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-8-201ENST00000365467 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-25P-201ENST00000383873 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-1-201ENST00000383898 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-48P-201ENST00000384161 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-36P-201ENST00000384172 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-4P-201ENST00000384205 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-5P-201ENST00000384238 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-3P-201ENST00000384314 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 RNU6-16P-201ENST00000384385 107 ntBASIC3.81□□□□□ -1.8
CLRN3Q8NCR9 SNORD116-29-201ENST00000384516 83 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms