Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC104564.1-201ENST00000493028 407 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC111000.5-201ENST00000506559 1178 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC114786.4-201ENST00000508771 728 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC021146.7-201ENST00000509604 775 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC114797.1-201ENST00000514003 728 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC093677.1-201ENST00000514414 678 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC026801.2-201ENST00000515352 425 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC136624.4-201ENST00000573044 370 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC024619.4-201ENST00000580924 316 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AL512506.2-201ENST00000624472 458 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 PISRT1-201ENST00000626175 531 ntBASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
LINC00643Q86TS7 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 RNA5SP88-201ENST00000365560 109 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 RNU6-1226P-201ENST00000384317 107 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 MIR449B-201ENST00000384995 97 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AL356057.1-202ENST00000402263 756 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AL135786.1-201ENST00000415892 214 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 TOMM20P4-201ENST00000427861 435 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AL354941.1-201ENST00000438600 464 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC009238.1-201ENST00000442165 424 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 DDX3P2-201ENST00000446138 111 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC009237.6-201ENST00000446969 424 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 RPS29P29-201ENST00000456396 171 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC092902.1-201ENST00000486999 259 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 SSR3-208ENST00000496050 579 ntTSL 4 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 POLR2KP1-201ENST00000553226 168 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 MIR3160-1-201ENST00000577972 85 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC090312.2-201ENST00000582687 378 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 HMGN2P15-201ENST00000585707 270 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 NTAN1P1-201ENST00000603150 646 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AP003973.1-201ENST00000604639 691 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 RMST_6.1-201ENST00000611980 203 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 AP003485.1-201ENST00000625093 753 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 MTND5P1-201ENST00000445440 1375 ntBASIC0.67□□□□□ -2.3
LINC00643Q86TS7 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
LINC00643Q86TS7 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AC005832.2-201ENST00000538921 1430 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AP005901.5-201ENST00000545779 1796 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 SNORA70.7-201ENST00000384159 133 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 NPM1P10-201ENST00000398310 865 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 STAT4-203ENST00000409995 709 ntTSL 5 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 RN7SL542P-201ENST00000467147 294 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 SNORA31.6-201ENST00000516241 130 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 HAUS1P3-201ENST00000523909 662 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 OR8K4P-201ENST00000534608 872 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 NIFKP6-201ENST00000598115 845 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AC079791.1-201ENST00000605356 973 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 MIR6820-201ENST00000611508 62 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 DUSP12P1-201ENST00000612874 516 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 MIR6729-201ENST00000618194 65 ntBASIC0.66□□□□□ -2.3
LINC00643Q86TS7 ELOC-205ENST00000520210 1451 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
LINC00643Q86TS7 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.3
LINC00643Q86TS7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 SNORA58B-201ENST00000364259 136 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC023512.1-201ENST00000444513 499 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC104164.3-201ENST00000467363 1258 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC021382.1-201ENST00000483523 359 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 MRPS33P3-201ENST00000513456 322 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC104057.1-201ENST00000515547 497 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 OR5B19P-201ENST00000531766 928 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AL391261.3-201ENST00000557194 520 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC005668.1-201ENST00000571142 476 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 MTCYBP22-201ENST00000603788 447 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AC013553.2-201ENST00000604244 589 ntBASIC0.65□□□□□ -2.31
LINC00643Q86TS7 AL138963.2-201ENST00000605137 226 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 138.5 ms