Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 HMGB3P17-201ENST00000504195 649 ntBASIC1□□□□□ -2.25
USF3Q68DE3 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 AC133963.2-201ENST00000513686 578 ntBASIC1□□□□□ -2.25
USF3Q68DE3 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1□□□□□ -2.25
USF3Q68DE3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1□□□□□ -2.25
USF3Q68DE3 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1□□□□□ -2.25
USF3Q68DE3 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1□□□□□ -2.25
USF3Q68DE3 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC1□□□□□ -2.25
USF3Q68DE3 AL391646.1-201ENST00000603860 190 ntBASIC1□□□□□ -2.25
USF3Q68DE3 BNIP3P7-201ENST00000605641 516 ntBASIC1□□□□□ -2.25
USF3Q68DE3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1□□□□□ -2.25
USF3Q68DE3 AC091304.6-201ENST00000619761 202 ntBASIC1□□□□□ -2.25
USF3Q68DE3 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
USF3Q68DE3 SDAD1P2-201ENST00000441308 2028 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 MIR373-201ENST00000362273 69 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU4-41P-201ENST00000364426 143 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU1-133P-201ENST00000364867 167 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 MIR513A1-201ENST00000385138 129 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU2-32P-201ENST00000411193 191 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RPL7P30-201ENST00000420888 709 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC0.99□□□□□ -2.25
USF3Q68DE3 AC096632.1-201ENST00000427395 310 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AL445687.1-201ENST00000439946 251 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC0.99□□□□□ -2.25
USF3Q68DE3 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.99□□□□□ -2.25
USF3Q68DE3 AL031183.1-201ENST00000457667 207 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU7-26P-201ENST00000458980 63 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RPL31P58-201ENST00000469001 379 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 HMGB1P22-201ENST00000505315 124 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC009127.3-201ENST00000570531 403 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC0.99□□□□□ -2.25
USF3Q68DE3 MIR6864-201ENST00000617935 70 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC018755.4-201ENST00000619715 454 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
USF3Q68DE3 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
USF3Q68DE3 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
USF3Q68DE3 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU1-62P-201ENST00000362599 164 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU4-91P-201ENST00000364778 135 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU6-1293P-201ENST00000384077 107 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 MIR520E-201ENST00000384867 87 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 TPMTP3-201ENST00000411928 735 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AL022400.1-201ENST00000423946 935 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RFC5P1-201ENST00000454419 874 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
USF3Q68DE3 AC021087.2-201ENST00000504656 1203 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU6-113P-201ENST00000516653 101 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC0.99□□□□□ -2.25
USF3Q68DE3 DUXAP5-201ENST00000529668 529 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC022880.1-201ENST00000534017 973 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC023824.2-201ENST00000566185 400 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC0.99□□□□□ -2.25
USF3Q68DE3 AC011712.1-201ENST00000588959 234 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC135178.6-201ENST00000605314 398 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC097504.2-201ENST00000608088 454 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 AC025594.3-201ENST00000613068 790 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 RNU6-156P-201ENST00000621869 107 ntBASIC0.99□□□□□ -2.25
USF3Q68DE3 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
USF3Q68DE3 AC008669.1-201ENST00000565823 2178 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 SLC10A5P1-201ENST00000379063 1306 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 Y_RNA.295-201ENST00000364918 102 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 MIR150-201ENST00000385048 84 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 AL023807.1-201ENST00000407932 359 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 AL606495.1-201ENST00000422100 813 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.98□□□□□ -2.25
USF3Q68DE3 snoU13.3-201ENST00000459441 104 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 AC078857.1-201ENST00000469870 667 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC0.98□□□□□ -2.25
USF3Q68DE3 AC093852.1-201ENST00000503587 266 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 AC106791.2-201ENST00000604680 391 ntBASIC0.98□□□□□ -2.25
USF3Q68DE3 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
USF3Q68DE3 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC0.98□□□□□ -2.25
USF3Q68DE3 SGO1P2-201ENST00000429458 1589 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC006548.1-201ENST00000427470 102 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
USF3Q68DE3 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC0.97□□□□□ -2.25
USF3Q68DE3 FABP5P3-201ENST00000437960 408 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 SETP11-201ENST00000473027 690 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC096745.1-201ENST00000509945 370 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 AC113155.1-201ENST00000511141 769 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC0.97□□□□□ -2.25
USF3Q68DE3 AC083806.3-201ENST00000614016 455 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 CR381572.1-201ENST00000625098 102 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC0.97□□□□□ -2.25
USF3Q68DE3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC0.97□□□□□ -2.25
USF3Q68DE3 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
USF3Q68DE3 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC0.97□□□□□ -2.25
USF3Q68DE3 SNORD114-27-201ENST00000363766 70 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 SNORA1.3-201ENST00000384676 136 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 RNA5SP465-201ENST00000391195 109 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 CISD1P1-201ENST00000393907 327 ntBASIC0.97□□□□□ -2.25
USF3Q68DE3 RABEPKP1-201ENST00000440529 1026 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms