Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNA5SP208-201ENST00000516156 78 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 RNU6-405P-201ENST00000516637 110 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 EIF4BP1-201ENST00000554881 351 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC245505.1-201ENST00000556398 224 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC055876.1-202ENST00000567053 138 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 LARP7P3-201ENST00000579888 337 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC105224.1-201ENST00000587055 421 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 DPPA3P3-201ENST00000603842 430 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AL136363.1-201ENST00000605349 337 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AC010133.1-201ENST00000615809 842 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 AL138880.2-201ENST00000616214 239 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 FARSBP1-201ENST00000435808 1778 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 MAPK10-322ENST00000641485 4530 ntBASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.01□□□□□ -1.93
PDLIM3Q53GG5 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNY1P12-201ENST00000364251 105 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 SNORD116-4-201ENST00000384733 96 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RN7SKP285-201ENST00000410137 318 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNU2-36P-201ENST00000410361 191 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNU2-62P-201ENST00000410868 191 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNA5SP120-201ENST00000410900 112 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RPL27AP8-201ENST00000424277 446 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC009961.2-201ENST00000435771 251 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 NANOGNBP1-201ENST00000448444 480 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 SNRPGP6-201ENST00000451124 220 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 TPTE2P5-203ENST00000458118 728 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC091179.1-201ENST00000461606 579 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RPL7P5-201ENST00000471472 736 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC025518.1-201ENST00000479856 347 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 AL359273.1-201ENST00000510918 627 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 SNORA70.16-201ENST00000516390 95 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 Vault.3-201ENST00000516676 95 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RN7SKP60-201ENST00000516985 239 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 RNU6-430P-201ENST00000517078 107 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 ARL2BPP2-201ENST00000550907 489 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 MIR4425-201ENST00000580572 84 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 RMST_8.1-201ENST00000610287 165 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC013412.1-201ENST00000610687 192 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC005332.10-201ENST00000612725 619 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 SDR42E1P2-201ENST00000614861 481 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 uc_338.12-201ENST00000616344 181 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC084035.1-201ENST00000634543 607 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 AL732372.2-225ENST00000642124 456 ntBASIC3□□□□□ -1.93
PDLIM3Q53GG5 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PDLIM3Q53GG5 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3□□□□□ -1.93
PDLIM3Q53GG5 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 RNU6-223P-201ENST00000362830 107 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 SNORA36C-201ENST00000384289 132 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC110754.1-201ENST00000399740 601 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 RNU2-16P-201ENST00000410712 136 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 RNU2-8P-201ENST00000410727 190 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 BTF3L4P3-201ENST00000418879 476 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 FCF1P1-201ENST00000432690 571 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 NDUFB1P1-201ENST00000435191 180 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 MTATP6P30-201ENST00000443540 664 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC093392.2-201ENST00000450682 337 ntBASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.99□□□□□ -1.93
PDLIM3Q53GG5 AC004801.2-202ENST00000463559 283 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms