Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.399-201ENST00000383955 105 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AL139397.2-201ENST00000404529 772 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RPS4XP7-201ENST00000406274 780 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 HSPE1P8-201ENST00000406997 288 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RN7SKP158-201ENST00000410453 326 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RPL37P10-201ENST00000412884 288 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 RPL23AP89-201ENST00000439324 255 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AP002812.1-201ENST00000495378 474 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 RNU6-1170P-201ENST00000515974 106 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RNA5SP73-201ENST00000516744 108 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AP003730.1-201ENST00000524605 285 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AP005639.2-201ENST00000527592 928 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA4Q00056 HMGB3P26-201ENST00000560051 582 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AL591034.3-201ENST00000605511 685 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC022893.3-201ENST00000607665 437 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA4Q00056 U2.17-201ENST00000611454 95 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 FAM27D1-201ENST00000612308 341 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC134503.1-201ENST00000633048 54 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 MIR4275-201ENST00000636486 87 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA4Q00056 Z73965.1-201ENST00000623412 2297 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 AC000123.3-201ENST00000624029 4975 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
HOXA4Q00056 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA4Q00056 AC104118.1-201ENST00000607625 1589 ntBASIC3.51□□□□□ -1.85
HOXA4Q00056 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXA4Q00056 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 MIR372-201ENST00000362225 67 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RNA5SP28-201ENST00000363841 119 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 Y_RNA.216-201ENST00000364205 93 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RNY4P36-201ENST00000391116 96 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 SNORA75.4-201ENST00000391278 119 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RPS12P24-201ENST00000412619 387 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 TOMM22P1-201ENST00000418578 312 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 BX842559.1-201ENST00000419615 532 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 SKA2P1-201ENST00000425592 390 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 AL591212.2-201ENST00000433923 257 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 TBCAP1-201ENST00000436520 327 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 FABP5P14-201ENST00000437273 393 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC006011.1-201ENST00000442758 349 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA4Q00056 MTND4P19-201ENST00000446659 478 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 MRPS31P2-201ENST00000451581 518 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXA4Q00056 RNU7-167P-201ENST00000459160 62 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RPL7AP28-201ENST00000464513 571 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC087884.1-201ENST00000469738 328 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RPS26P28-201ENST00000470806 348 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 RPS27P27-201ENST00000498779 255 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 VN1R104P-201ENST00000505115 1009 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 HMGB3P15-201ENST00000507326 574 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA4Q00056 SNORA31.20-201ENST00000517111 133 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.5□□□□□ -1.85
HOXA4Q00056 TRMT10BP1-201ENST00000519377 943 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 ERHP1-201ENST00000523006 310 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXA4Q00056 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 FAM60BP-201ENST00000578364 658 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXA4Q00056 AC138761.3-201ENST00000579993 334 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 MIR3171-201ENST00000584270 74 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 MIR5692C1-201ENST00000585309 91 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC023043.2-201ENST00000589678 1026 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXA4Q00056 AC080078.3-201ENST00000605407 463 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC124303.1-201ENST00000605703 360 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 FAM157A-202ENST00000615155 405 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AL023881.1-201ENST00000621088 301 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 AC022893.2-201ENST00000564832 3296 ntBASIC3.5□□□□□ -1.85
HOXA4Q00056 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXA4Q00056 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXA4Q00056 MTND4P27-201ENST00000450813 1354 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms