Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 AC114981.1-201ENST00000503897 678 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 CDC42P4-201ENST00000510507 563 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 AC010587.2-201ENST00000511727 448 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 OR5BM1P-201ENST00000512021 366 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 AC025881.1-201ENST00000518851 512 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA9P31269 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.52□□□□□ -2.01
HOXA9P31269 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA9P31269 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 MED28P6-201ENST00000558776 231 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC2.52□□□□□ -2.01
HOXA9P31269 AC025281.1-201ENST00000567026 265 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.52□□□□□ -2.01
HOXA9P31269 AL158827.2-201ENST00000602494 330 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC2.52□□□□□ -2.01
HOXA9P31269 AL139418.1-201ENST00000613613 177 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA9P31269 AC231657.1-201ENST00000624313 397 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA9P31269 AL691447.3-201ENST00000635020 330 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.52□□□□□ -2.01
HOXA9P31269 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.52□□□□□ -2.01
HOXA9P31269 AL390862.1-201ENST00000635467 1469 ntBASIC2.52□□□□□ -2.01
HOXA9P31269 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA9P31269 SNORD113-6-201ENST00000363345 75 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 RNU4-28P-201ENST00000364739 141 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 RNU6-157P-201ENST00000383957 107 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 SNORA41-201ENST00000384675 132 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 BTF3P7-201ENST00000407097 488 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 RNU2-47P-201ENST00000410649 186 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.51□□□□□ -2.01
HOXA9P31269 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA9P31269 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA9P31269 MTND1P32-201ENST00000433043 938 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 HMGB3P12-201ENST00000438745 556 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 MTND3P1-201ENST00000441336 220 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AL353691.1-201ENST00000451332 387 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 SUMO2P2-201ENST00000456482 255 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 AC097493.1-201ENST00000463958 372 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 RPL7P18-201ENST00000478965 734 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA9P31269 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 RPL37P25-201ENST00000507308 276 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC006390.1-201ENST00000508068 283 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.51□□□□□ -2.01
HOXA9P31269 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.51□□□□□ -2.01
HOXA9P31269 CKS1BP7-201ENST00000522230 235 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 CYCSP2-201ENST00000558168 301 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 MIR4446-201ENST00000578505 67 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 AL356575.1-201ENST00000603008 283 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AL049779.4-201ENST00000604500 156 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC006270.3-201ENST00000605967 1036 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC046143.2-201ENST00000609789 160 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 BX664608.1-201ENST00000610519 487 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC079395.3-201ENST00000615161 484 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC011330.2-201ENST00000621680 635 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.51□□□□□ -2.01
HOXA9P31269 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA9P31269 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
HOXA9P31269 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HOXA9P31269 AL079343.1-201ENST00000572358 1771 ntBASIC2.51□□□□□ -2.01
HOXA9P31269 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXA9P31269 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HOXA9P31269 Y_RNA.548-201ENST00000384656 105 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
HOXA9P31269 RN7SKP140-201ENST00000411196 284 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 RPS24P7-201ENST00000416921 246 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 RPL7L1P10-201ENST00000427790 463 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 MTND4LP10-201ENST00000435146 291 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 EEF1E1P1-201ENST00000446998 430 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.5□□□□□ -2.01
HOXA9P31269 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXA9P31269 RPS27P27-201ENST00000498779 255 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 COX7A2P2-201ENST00000505291 250 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXA9P31269 HSPE1P23-201ENST00000509838 286 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 AC026436.1-201ENST00000510537 270 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 AC093677.1-201ENST00000514414 678 ntBASIC2.5□□□□□ -2.01
HOXA9P31269 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXA9P31269 RNA5SP281-201ENST00000516504 135 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms