Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC5.14□□□□□ -1.59
LIG1P18858 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG1P18858 snoU109.4-201ENST00000458953 143 ntBASIC5.14□□□□□ -1.59
LIG1P18858 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG1P18858 RPL23AP2-201ENST00000471227 466 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC010655.3-201ENST00000478818 450 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG1P18858 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.14□□□□□ -1.59
LIG1P18858 AC026782.1-201ENST00000512952 449 ntBASIC5.14□□□□□ -1.59
LIG1P18858 Y_RNA.661-201ENST00000516003 99 ntBASIC5.14□□□□□ -1.59
LIG1P18858 SNORA14.1-201ENST00000516113 141 ntBASIC5.14□□□□□ -1.59
LIG1P18858 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 OR8R1P-201ENST00000543943 764 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC5.14□□□□□ -1.59
LIG1P18858 AL138889.2-201ENST00000603883 242 ntBASIC5.14□□□□□ -1.59
LIG1P18858 ATP1B3P1-201ENST00000605365 821 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC018462.2-201ENST00000605375 395 ntBASIC5.14□□□□□ -1.59
LIG1P18858 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.14□□□□□ -1.59
LIG1P18858 SNHG22-203ENST00000617833 660 ntBASIC5.14□□□□□ -1.59
LIG1P18858 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG1P18858 AC139769.1-204ENST00000472297 1931 ntBASIC5.14□□□□□ -1.59
LIG1P18858 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
LIG1P18858 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.14□□□□□ -1.59
LIG1P18858 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 AC010300.1-201ENST00000600671 5134 ntBASIC5.13□□□□□ -1.59
LIG1P18858 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG1P18858 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 AC021146.4-201ENST00000309229 279 ntBASIC5.13□□□□□ -1.59
LIG1P18858 RNU1-108P-201ENST00000362556 161 ntBASIC5.13□□□□□ -1.59
LIG1P18858 Y_RNA.153-201ENST00000363615 91 ntBASIC5.13□□□□□ -1.59
LIG1P18858 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 Y_RNA.496-201ENST00000384444 101 ntBASIC5.13□□□□□ -1.59
LIG1P18858 Y_RNA.556-201ENST00000384677 113 ntBASIC5.13□□□□□ -1.59
LIG1P18858 SNORA16.2-201ENST00000390991 127 ntBASIC5.13□□□□□ -1.59
LIG1P18858 SNORD70.1-201ENST00000391007 85 ntBASIC5.13□□□□□ -1.59
LIG1P18858 RNU6-1050P-201ENST00000410388 107 ntBASIC5.13□□□□□ -1.59
LIG1P18858 RPL21P24-201ENST00000413752 448 ntBASIC5.13□□□□□ -1.59
LIG1P18858 RPLP0P7-201ENST00000416050 667 ntBASIC5.13□□□□□ -1.59
LIG1P18858 RAC1P3-201ENST00000416129 580 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG1P18858 AC010655.1-201ENST00000449336 292 ntBASIC5.13□□□□□ -1.59
LIG1P18858 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG1P18858 RNU7-167P-201ENST00000459160 62 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG1P18858 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 AC116655.1-201ENST00000508324 901 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG1P18858 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG1P18858 Y_RNA.670-201ENST00000516255 105 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AC009812.2-201ENST00000517657 457 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG1P18858 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.13□□□□□ -1.59
LIG1P18858 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG1P18858 AC009229.3-201ENST00000608056 282 ntBASIC5.13□□□□□ -1.59
LIG1P18858 AC015813.4-201ENST00000610469 179 ntBASIC5.13□□□□□ -1.59
LIG1P18858 U3.53-201ENST00000628922 216 ntBASIC5.13□□□□□ -1.59
LIG1P18858 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG1P18858 MIR4496-201ENST00000635896 61 ntBASIC5.13□□□□□ -1.59
LIG1P18858 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.13□□□□□ -1.59
LIG1P18858 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.13□□□□□ -1.59
LIG1P18858 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIG1P18858 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC5.12□□□□□ -1.59
LIG1P18858 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
LIG1P18858 RNA5SP52-201ENST00000362448 134 ntBASIC5.12□□□□□ -1.59
LIG1P18858 SMIM11P1-201ENST00000369586 178 ntBASIC5.12□□□□□ -1.59
LIG1P18858 Y_RNA.404-201ENST00000383978 102 ntBASIC5.12□□□□□ -1.59
LIG1P18858 AC008267.5-201ENST00000424928 265 ntBASIC5.12□□□□□ -1.59
LIG1P18858 PSMA2P3-201ENST00000429685 675 ntBASIC5.12□□□□□ -1.59
LIG1P18858 AC011753.3-201ENST00000443436 406 ntBASIC5.12□□□□□ -1.59
LIG1P18858 GSTA11P-201ENST00000452866 669 ntBASIC5.12□□□□□ -1.59
LIG1P18858 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.12□□□□□ -1.59
LIG1P18858 RPS26P28-201ENST00000470806 348 ntBASIC5.12□□□□□ -1.59
LIG1P18858 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.12□□□□□ -1.59
LIG1P18858 AC020593.1-201ENST00000507399 299 ntBASIC5.12□□□□□ -1.59
LIG1P18858 RNU6-470P-201ENST00000515954 104 ntBASIC5.12□□□□□ -1.59
LIG1P18858 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.12□□□□□ -1.59
LIG1P18858 GNAI2P1-201ENST00000541815 315 ntBASIC5.12□□□□□ -1.59
LIG1P18858 AC113195.1-201ENST00000579952 141 ntBASIC5.12□□□□□ -1.59
LIG1P18858 AC008745.1-201ENST00000604064 271 ntBASIC5.12□□□□□ -1.59
LIG1P18858 RNA5SP108-201ENST00000605921 117 ntBASIC5.12□□□□□ -1.59
LIG1P18858 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG1P18858 AL138721.1-201ENST00000616756 179 ntBASIC5.12□□□□□ -1.59
LIG1P18858 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.12□□□□□ -1.59
LIG1P18858 AL732372.2-225ENST00000642124 456 ntBASIC5.12□□□□□ -1.59
LIG1P18858 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG1P18858 AC068254.2-201ENST00000623938 3577 ntBASIC5.12□□□□□ -1.59
LIG1P18858 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIG1P18858 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG1P18858 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIG1P18858 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
LIG1P18858 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.11□□□□□ -1.59
LIG1P18858 RNU1-115P-201ENST00000365329 160 ntBASIC5.11□□□□□ -1.59
LIG1P18858 SNORA63.7-201ENST00000365579 123 ntBASIC5.11□□□□□ -1.59
LIG1P18858 RNU6-393P-201ENST00000384475 107 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms