Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL356432.3-201ENST00000568952 465 ntBASIC2.62□□□□□ -1.99
SDC1P18827 RPL23AP84-201ENST00000571193 464 ntBASIC2.62□□□□□ -1.99
SDC1P18827 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.62□□□□□ -1.99
SDC1P18827 WISP1-OT1-201ENST00000602893 642 ntBASIC2.62□□□□□ -1.99
SDC1P18827 AC024220.1-201ENST00000603675 484 ntBASIC2.62□□□□□ -1.99
SDC1P18827 AC007179.3-201ENST00000604976 235 ntBASIC2.62□□□□□ -1.99
SDC1P18827 AC108747.1-201ENST00000609508 535 ntBASIC2.62□□□□□ -1.99
SDC1P18827 OR10AB1P-201ENST00000609613 938 ntBASIC2.62□□□□□ -1.99
SDC1P18827 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.62□□□□□ -1.99
SDC1P18827 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SDC1P18827 AL138880.2-201ENST00000616214 239 ntBASIC2.62□□□□□ -1.99
SDC1P18827 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.62□□□□□ -1.99
SDC1P18827 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC2.62□□□□□ -1.99
SDC1P18827 AC004777.1-201ENST00000624317 287 ntBASIC2.62□□□□□ -1.99
SDC1P18827 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
SDC1P18827 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
SDC1P18827 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SDC1P18827 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
SDC1P18827 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
SDC1P18827 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 AC009487.2-201ENST00000420969 6821 ntBASIC2.61□□□□□ -1.99
SDC1P18827 TPTE2P4-201ENST00000258589 1605 ntBASIC2.61□□□□□ -1.99
SDC1P18827 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 Y_RNA.169-201ENST00000363745 96 ntBASIC2.61□□□□□ -1.99
SDC1P18827 RNU5A-8P-201ENST00000364102 114 ntBASIC2.61□□□□□ -1.99
SDC1P18827 RNU6-270P-201ENST00000364131 105 ntBASIC2.61□□□□□ -1.99
SDC1P18827 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 SNORA18.3-201ENST00000384122 132 ntBASIC2.61□□□□□ -1.99
SDC1P18827 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 RNU6-920P-201ENST00000410926 92 ntBASIC2.61□□□□□ -1.99
SDC1P18827 RPL21P24-201ENST00000413752 448 ntBASIC2.61□□□□□ -1.99
SDC1P18827 SPA17P1-201ENST00000416656 452 ntBASIC2.61□□□□□ -1.99
SDC1P18827 RPL7P10-201ENST00000417407 739 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AL365203.2-201ENST00000423444 196 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AL512844.2-201ENST00000433990 593 ntBASIC2.61□□□□□ -1.99
SDC1P18827 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 AC118469.1-201ENST00000442943 488 ntBASIC2.61□□□□□ -1.99
SDC1P18827 MTATP6P30-201ENST00000443540 664 ntBASIC2.61□□□□□ -1.99
SDC1P18827 CBWD4P-201ENST00000445695 655 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC010099.1-201ENST00000455434 375 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC010631.1-201ENST00000474150 156 ntBASIC2.61□□□□□ -1.99
SDC1P18827 RPL23AP41-201ENST00000484754 458 ntBASIC2.61□□□□□ -1.99
SDC1P18827 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 AC098862.1-201ENST00000504991 413 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC111000.2-201ENST00000507775 550 ntBASIC2.61□□□□□ -1.99
SDC1P18827 CDC42P4-201ENST00000510507 563 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 RNU6-64P-201ENST00000517119 105 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.61□□□□□ -1.99
SDC1P18827 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 AC123904.3-201ENST00000547218 814 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC123904.2-201ENST00000548059 300 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.61□□□□□ -1.99
SDC1P18827 AC135628.1-201ENST00000568867 534 ntBASIC2.61□□□□□ -1.99
SDC1P18827 MIR3609-201ENST00000582661 80 ntBASIC2.61□□□□□ -1.99
SDC1P18827 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 NIFKP6-201ENST00000598115 845 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 AC012468.1-201ENST00000604888 430 ntBASIC2.61□□□□□ -1.99
SDC1P18827 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC096577.2-201ENST00000611455 153 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AL162274.2-201ENST00000614406 332 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AC104010.1-201ENST00000616889 150 ntBASIC2.61□□□□□ -1.99
SDC1P18827 AL136313.1-201ENST00000624804 202 ntBASIC2.61□□□□□ -1.99
SDC1P18827 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.61□□□□□ -1.99
SDC1P18827 AC093591.3-201ENST00000634516 308 ntBASIC2.61□□□□□ -1.99
SDC1P18827 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.61□□□□□ -1.99
SDC1P18827 AC007785.2-201ENST00000598627 1916 ntBASIC2.61□□□□□ -1.99
SDC1P18827 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SDC1P18827 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SDC1P18827 RNU1-140P-201ENST00000365040 165 ntBASIC2.6□□□□□ -1.99
SDC1P18827 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SDC1P18827 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.6□□□□□ -1.99
SDC1P18827 UBA52P6-201ENST00000399822 382 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MTCYBP36-201ENST00000404146 440 ntBASIC2.6□□□□□ -1.99
SDC1P18827 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC1P18827 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.6□□□□□ -1.99
SDC1P18827 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC1P18827 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC1P18827 AC112220.1-201ENST00000434628 355 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC1P18827 AL031183.1-201ENST00000457667 207 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MTCO2P6-201ENST00000463134 685 ntBASIC2.6□□□□□ -1.99
SDC1P18827 SETP11-201ENST00000473027 690 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC090525.1-201ENST00000479116 478 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC010486.2-201ENST00000505572 483 ntBASIC2.6□□□□□ -1.99
SDC1P18827 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SDC1P18827 RNU6-928P-201ENST00000516876 104 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms