Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 USP9YP13-201ENST00000417797 480 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXD4P09016 MTND4LP10-201ENST00000435146 291 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.89□□□□□ -1.95
HOXD4P09016 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.89□□□□□ -1.95
HOXD4P09016 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 AC006390.1-201ENST00000508068 283 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD4P09016 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.89□□□□□ -1.95
HOXD4P09016 MIR4528-201ENST00000577763 90 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC009977.1-201ENST00000586015 570 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 UBE2L4-201ENST00000587688 464 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL136363.2-201ENST00000604173 851 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC098614.4-201ENST00000607601 462 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 AC131902.3-201ENST00000611767 581 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL390240.1-201ENST00000612950 384 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL355810.1-201ENST00000614629 552 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC015540.1-201ENST00000615828 501 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AL158801.5-201ENST00000623123 465 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 AC073476.4-201ENST00000628409 72 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.89□□□□□ -1.95
HOXD4P09016 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD4P09016 AC092125.1-201ENST00000562568 1995 ntBASIC2.89□□□□□ -1.95
HOXD4P09016 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HOXD4P09016 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXD4P09016 RNY4P24-201ENST00000362735 96 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 RNU6-192P-201ENST00000391253 100 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 RPL7P25-201ENST00000404151 721 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 RNU2-66P-201ENST00000410650 161 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC092447.6-201ENST00000414578 210 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL356968.1-201ENST00000416622 474 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXD4P09016 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD4P09016 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD4P09016 Z99127.3-201ENST00000448158 395 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXD4P09016 AC140076.1-201ENST00000449897 361 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL033528.1-201ENST00000453780 140 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC104308.1-201ENST00000454621 333 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC2.88□□□□□ -1.95
HOXD4P09016 KLF3P2-201ENST00000465138 268 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.88□□□□□ -1.95
HOXD4P09016 RNU1-143P-201ENST00000516296 146 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 AP003497.1-201ENST00000528472 562 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC022080.3-201ENST00000544433 482 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC005476.1-201ENST00000554427 397 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 H3F3AP1-201ENST00000559984 334 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 AP001029.3-201ENST00000588063 596 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL133393.1-201ENST00000603277 287 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC091805.2-201ENST00000603848 235 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 NDUFA8P1-201ENST00000605525 367 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 U1.23-201ENST00000610293 146 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AL589743.7-201ENST00000612637 233 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 AC008250.2-201ENST00000615261 205 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 RNU1-68P-201ENST00000615382 146 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 U1.39-201ENST00000621562 146 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 AC092447.7-201ENST00000422212 1621 ntBASIC2.88□□□□□ -1.95
HOXD4P09016 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HOXD4P09016 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.88□□□□□ -1.95
HOXD4P09016 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HOXD4P09016 MTND5P29-201ENST00000458676 1807 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 RNU6-1074P-201ENST00000383995 104 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HOXD4P09016 SNORD115.1-201ENST00000391109 76 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AL359704.1-201ENST00000411586 781 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC078974.1-201ENST00000411597 223 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXD4P09016 AC010975.2-201ENST00000427781 588 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 OR2AS1P-201ENST00000427827 319 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXD4P09016 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXD4P09016 RPL22P17-201ENST00000438729 315 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 PGBD4P3-201ENST00000440731 581 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AC244505.5-201ENST00000443639 207 ntBASIC2.87□□□□□ -1.95
HOXD4P09016 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms