Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
USP3Q9Y6I4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.57
USP3Q9Y6I4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
USP3Q9Y6I4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
USP3Q9Y6I4 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.57
USP3Q9Y6I4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RNU6-1266P-201ENST00000362794 105 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.83-201ENST00000363005 113 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RNY3P4-201ENST00000384428 101 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 GLULP6-201ENST00000399502 913 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AL080315.1-201ENST00000406055 466 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 SNORA11B-201ENST00000408175 129 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 MIR1298-201ENST00000408783 112 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AC087650.1-201ENST00000431445 468 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AL591043.1-201ENST00000432461 424 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AL356981.1-201ENST00000454879 684 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.644-201ENST00000459006 113 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RN7SL591P-201ENST00000496150 292 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.674-201ENST00000516362 113 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 SNORA25.14-201ENST00000516481 132 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RNA5SP392-201ENST00000516905 112 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AL049539.1-201ENST00000611964 459 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AL450472.1-202ENST00000637286 180 ntBASIC5.21□□□□□ -1.58
USP3Q9Y6I4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
USP3Q9Y6I4 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 snoU2_19.2-201ENST00000363024 80 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 PCNPP3-201ENST00000393579 471 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 RNA5SP494-201ENST00000410653 129 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 SNORD56-201ENST00000413522 71 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 COX6B1P1-201ENST00000415962 213 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC104333.2-201ENST00000422630 192 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 HMGN2P27-201ENST00000427352 270 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 TOMM20P4-201ENST00000427861 435 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC091286.1-201ENST00000431233 461 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC112498.1-201ENST00000444401 332 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 BTF3P6-201ENST00000448054 499 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 ISCUP1-201ENST00000454451 448 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC104581.2-201ENST00000572227 430 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 MIR4300-201ENST00000581016 96 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AL713866.2-201ENST00000603579 219 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.772-201ENST00000606692 102 ntBASIC5.2□□□□□ -1.58
USP3Q9Y6I4 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.2□□□□□ -1.58
USP3Q9Y6I4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
USP3Q9Y6I4 Y_RNA.581-201ENST00000391017 97 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 MIR190B-201ENST00000401119 79 ntBASIC5.19□□□□□ -1.58
USP3Q9Y6I4 AC007738.1-201ENST00000413892 348 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms