Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 RNA5SP500-201ENST00000364486 119 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 Y_RNA.542-201ENST00000384641 111 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 Y_RNA.563-201ENST00000384707 108 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 RPL11P3-201ENST00000395256 523 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL513331.1-201ENST00000411908 397 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 CRIP1P1-201ENST00000427567 185 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL353705.4-201ENST00000449661 238 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 GLUD1P3-202ENST00000508551 200 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AC008694.2-201ENST00000517591 306 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 HMGN2P36-201ENST00000529541 409 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 CARD18-203ENST00000532895 422 ntTSL 2 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 MIR4782-201ENST00000577987 79 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 MIR3176-201ENST00000582210 90 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 uc_338.26-201ENST00000612659 160 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AL139099.4-201ENST00000614802 114 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AP005431.1-201ENST00000618479 319 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 AC110491.1-201ENST00000562191 2010 ntBASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
PCDHB3Q9Y5E6 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC239868.2-201ENST00000564237 4527 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-1167P-201ENST00000363227 94 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNA5SP211-201ENST00000365516 117 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-213P-201ENST00000384051 104 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 MIR153-2-201ENST00000385225 87 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-712P-201ENST00000410558 100 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 MTATP6P4-201ENST00000427725 675 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC138761.5-201ENST00000433967 325 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC074290.1-201ENST00000448883 135 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 IGHV5-78-201ENST00000450948 295 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 TEX41-209ENST00000451478 452 ntTSL 2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-191P-201ENST00000516295 94 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-659P-201ENST00000516454 104 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 BNIP3P5-201ENST00000562290 498 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC127455.1-201ENST00000565496 145 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AL161798.1-201ENST00000604630 131 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 AC068831.7-201ENST00000616954 363 ntBASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
PCDHB3Q9Y5E6 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 Y_RNA.420-201ENST00000384043 110 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-882P-201ENST00000391025 103 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-1064P-201ENST00000410626 104 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 RNU6-603P-201ENST00000411403 107 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 AC009541.1-201ENST00000438279 2662 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 COPS8P2-201ENST00000473228 627 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 RPL21P13-201ENST00000488305 481 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 RPL23AP49-201ENST00000492925 468 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 AC092593.1-201ENST00000515413 1815 ntBASIC5.61□□□□□ -1.51
PCDHB3Q9Y5E6 IGKV2-18-201ENST00000522607 343 ntBASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms