Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.24□□□□□ -1.73
LIMCH1Q9UPQ0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RNU5E-4P-201ENST00000364931 120 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-996P-201ENST00000365438 107 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-629P-201ENST00000384061 103 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RPL32P23-201ENST00000397237 405 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RN7SKP156-201ENST00000410308 342 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-373P-201ENST00000411247 98 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 HMGN2P21-201ENST00000447764 270 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC006512.1-201ENST00000468816 291 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 MLLT10P2-201ENST00000506434 249 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC026402.1-201ENST00000513642 170 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 RNU2-27P-201ENST00000516185 142 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC007991.1-201ENST00000522680 631 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 TOMM20P2-201ENST00000540082 421 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC244505.7-201ENST00000599675 272 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AL049634.3-201ENST00000604968 457 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AL357078.3-201ENST00000607528 618 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC025253.1-201ENST00000613623 543 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 U7.8-201ENST00000619968 63 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC006020.1-201ENST00000420179 1854 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 AC092326.2-201ENST00000624772 1561 ntBASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
LIMCH1Q9UPQ0 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-179P-201ENST00000363350 107 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 Y_RNA.303-201ENST00000364998 94 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 MT-TL1-201ENST00000386347 75 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AL138799.3-201ENST00000438968 350 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AL359073.1-201ENST00000448036 403 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 MRPS31P2-201ENST00000451581 518 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 RPS24P6-201ENST00000452670 400 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 snoU13.24-201ENST00000458998 104 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 NIPA2P2-201ENST00000496376 1083 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 FTH1P9-201ENST00000513251 355 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 RNU6-390P-201ENST00000516259 103 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 Vault.1-201ENST00000516474 102 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC026333.2-201ENST00000542164 106 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 MIR4425-201ENST00000580572 84 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC010928.3-201ENST00000587712 541 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AP001486.3-201ENST00000615334 372 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC092794.2-201ENST00000620933 563 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC022149.2-201ENST00000621061 203 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC024940.5-201ENST00000622889 474 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC093648.1-201ENST00000623546 606 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC009033.1-201ENST00000624279 431 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 AC009812.4-201ENST00000569134 1805 ntBASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
LIMCH1Q9UPQ0 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.73
LIMCH1Q9UPQ0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
LIMCH1Q9UPQ0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.21□□□□□ -1.73
LIMCH1Q9UPQ0 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 SNORA72.1-201ENST00000363485 129 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 Y_RNA.381-201ENST00000365666 102 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-876P-201ENST00000391295 104 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AL591416.1-201ENST00000404015 867 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 RNU6-387P-201ENST00000411331 105 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC009237.5-201ENST00000414271 501 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AC068533.1-201ENST00000418542 415 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 SDCBPP3-201ENST00000419629 891 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 MTATP6P4-201ENST00000427725 675 ntBASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.21□□□□□ -1.74
LIMCH1Q9UPQ0 ATP5JP1-201ENST00000431631 322 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms