Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 OR11H5P-201ENST00000554039 926 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 ATP5A1P2-202ENST00000616464 443 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 FTX_2.1-201ENST00000618816 94 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC011155.2-201ENST00000623202 216 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 CPHL1P-201ENST00000461341 3407 ntBASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.09□□□□□ -1.59
CCDC39Q9UFE4 AC018555.1-201ENST00000567548 1980 ntBASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC5.09□□□□□ -1.6
CCDC39Q9UFE4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.150-201ENST00000363562 102 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RNU6-187P-201ENST00000384139 106 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC016769.3-201ENST00000396562 315 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 MIR450B-201ENST00000401182 78 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AL133270.1-201ENST00000402635 279 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 MIR1252-201ENST00000408861 65 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC008280.1-201ENST00000418851 412 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC236972.1-201ENST00000433225 199 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AL162591.2-201ENST00000449634 317 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC005297.2-201ENST00000450430 606 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 HMGB3P21-201ENST00000452483 547 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RPL39P38-201ENST00000467018 153 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 FO393415.2-201ENST00000480085 343 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RPL21P93-201ENST00000480465 489 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 IGLV2-34-201ENST00000490007 283 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC022493.2-201ENST00000506122 481 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 SNORD116-26-201ENST00000516006 96 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.673-201ENST00000516306 88 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RNU7-51P-201ENST00000516560 62 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC022868.1-201ENST00000517767 391 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AC011979.2-201ENST00000527568 352 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 RN7SL690P-201ENST00000582087 240 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 AL606534.2-204ENST00000635008 178 ntBASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.08□□□□□ -1.6
CCDC39Q9UFE4 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RNA5SP388-201ENST00000362584 119 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RNU6-562P-201ENST00000362731 107 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RNA5SP391-201ENST00000363456 119 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 SNORA58B-201ENST00000364259 136 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 U3.11-201ENST00000364476 212 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 PRRC2CP1-201ENST00000404428 159 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RPL30P3-201ENST00000424262 333 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AL138785.1-201ENST00000425821 331 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RPL23AP43-201ENST00000446445 471 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AL162388.1-201ENST00000450912 352 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AL353752.1-201ENST00000454946 260 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AC026784.1-201ENST00000507986 352 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RNA5SP497-201ENST00000516081 97 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 OR5D17P-201ENST00000531492 978 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AC060771.1-201ENST00000582031 164 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 Z98751.3-201ENST00000604447 521 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 AP001784.1-201ENST00000624107 428 ntBASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC39Q9UFE4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNU6-28P-201ENST00000362378 107 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms