Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC060771.1-201ENST00000582031 164 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 MIR544B-201ENST00000582372 78 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 MIR3609-201ENST00000582661 80 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 UBE2L4-201ENST00000587688 464 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 BNIP3P23-201ENST00000599655 511 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC093424.1-201ENST00000604999 338 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AL158801.5-201ENST00000623123 465 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 MTND4P16-201ENST00000466108 1367 ntBASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.96□□□□□ -1.94
VPS54Q9P1Q0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 U8.9-201ENST00000365667 134 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 SNORD21-201ENST00000383953 95 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 RNU6-253P-201ENST00000384730 105 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 MIR196B-201ENST00000384852 84 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 U3.20-201ENST00000390909 217 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 MIR1289-1-201ENST00000408836 144 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC109583.1-201ENST00000432156 268 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 COX6CP2-201ENST00000444980 225 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AL606662.1-201ENST00000445763 553 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 ST13P20-201ENST00000447996 1065 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 MTND2P24-201ENST00000453434 806 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC034222.1-201ENST00000494052 532 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC013828.2-201ENST00000532487 235 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 ELOCP32-201ENST00000548625 324 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 MTATP6P24-201ENST00000576835 677 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC068313.1-201ENST00000604028 1008 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 AC019226.1-201ENST00000625666 515 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 PCMTD1P7-201ENST00000634506 357 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 OR4G2P-202ENST00000641004 1759 ntBASIC2.95□□□□□ -1.94
VPS54Q9P1Q0 Y_RNA.302-201ENST00000364997 102 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RNU1-39P-201ENST00000383897 165 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 MIR514A1-201ENST00000385133 98 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 SNORA26.7-201ENST00000391288 122 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL21P75-201ENST00000396599 483 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC119751.3-201ENST00000399720 670 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL21P28-201ENST00000401418 483 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AL592114.1-201ENST00000403842 483 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 NDUFB4P7-201ENST00000423198 363 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC234781.2-201ENST00000426370 994 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC008850.1-201ENST00000427546 362 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AL356867.1-201ENST00000429623 299 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL36AP6-201ENST00000435770 321 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 FAM103A2P-201ENST00000444122 354 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC009237.8-201ENST00000445492 379 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC010099.1-201ENST00000455434 375 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL21P39-201ENST00000463605 483 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL21P93-201ENST00000480465 489 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 MTND2P14-201ENST00000482139 351 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC233702.1-201ENST00000482905 502 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RN7SL432P-201ENST00000484057 298 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC087190.1-201ENST00000484462 480 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC093591.1-201ENST00000491435 481 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL30P5-201ENST00000494923 336 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC106872.3-201ENST00000495104 446 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 RPL21P16-201ENST00000495531 483 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC135721.1-201ENST00000497954 479 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AP000867.2-201ENST00000532468 320 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 GLUD1P4-201ENST00000590914 418 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC013553.2-201ENST00000604244 589 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AL031667.3-201ENST00000620124 655 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC007998.5-201ENST00000622938 237 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC079597.1-201ENST00000624306 508 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC092608.2-201ENST00000624427 218 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AL159972.1-201ENST00000625150 448 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC008993.2-201ENST00000631744 806 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 AC009902.3-201ENST00000606235 2172 ntBASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
VPS54Q9P1Q0 TPTE2P4-201ENST00000258589 1605 ntBASIC2.93□□□□□ -1.94
VPS54Q9P1Q0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms