Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR16-2-201ENST00000362117 81 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 RNU6-251P-201ENST00000363235 104 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 MIR325-201ENST00000385260 98 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 MTCO2P31-201ENST00000402702 684 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AL133264.1-201ENST00000407157 562 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 RNU2-20P-201ENST00000410425 191 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 AP1B1P2-201ENST00000416196 106 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC234781.2-201ENST00000426370 994 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC090774.1-201ENST00000435925 246 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 RPS15AP27-201ENST00000449183 343 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 RPL7P55-201ENST00000450522 746 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 CDC42P1-201ENST00000456658 548 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC118282.2-201ENST00000508739 374 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC090502.2-201ENST00000549267 280 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 SULT1C2P1-202ENST00000562418 459 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC093510.2-201ENST00000562820 896 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 MTCO1P40-201ENST00000574371 625 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC068790.3-201ENST00000602988 553 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 KATNBL1P5-201ENST00000605015 517 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AL359821.1-201ENST00000605519 182 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 MIR8070-201ENST00000616510 88 ntBASIC2.36□□□□□ -2.03
USP42Q9H9J4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.36□□□□□ -2.03
USP42Q9H9J4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
USP42Q9H9J4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC009812.4-201ENST00000569134 1805 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
USP42Q9H9J4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 OR5T3-201ENST00000303059 1023 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 RNU6-878P-201ENST00000384578 110 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 MIR135A2-201ENST00000384854 100 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AL021407.1-201ENST00000404531 386 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 MIR1294-201ENST00000408503 142 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC079804.2-201ENST00000490376 200 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 RPL30P5-201ENST00000494923 336 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 RPL37P25-201ENST00000507308 276 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 SNORA76.2-201ENST00000517095 137 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
USP42Q9H9J4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC068135.2-201ENST00000569293 1028 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 MIR3921-201ENST00000577308 85 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 RN7SL622P-201ENST00000585292 275 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC133794.1-201ENST00000602731 914 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AL355877.2-201ENST00000603670 358 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 MIR8081-201ENST00000611533 95 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AC006213.4-201ENST00000616184 634 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 AL512506.2-201ENST00000624472 458 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 OR5H6-203ENST00000642105 978 ntBASIC2.35□□□□□ -2.03
USP42Q9H9J4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
USP42Q9H9J4 AC008669.1-201ENST00000565823 2178 ntBASIC2.34□□□□□ -2.03
USP42Q9H9J4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 SNORA51.11-201ENST00000384442 131 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 RNU2-43P-201ENST00000410306 190 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 RNU2-28P-201ENST00000410457 189 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 RNU4-27P-201ENST00000410889 139 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 BEND7P1-201ENST00000422058 457 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 GTF2IP12-201ENST00000456547 356 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC013828.1-201ENST00000481845 158 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC005840.1-201ENST00000498412 377 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 COX7A2P2-201ENST00000505291 250 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC113420.1-201ENST00000507903 571 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC109464.2-201ENST00000510242 943 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 CDC42P4-201ENST00000510507 563 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC108078.2-201ENST00000510750 236 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 MRPS36P2-201ENST00000512569 299 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 RNA5SP135-201ENST00000517019 125 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 MTCYBP27-201ENST00000555160 670 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 MIR4303-201ENST00000581299 66 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 MIR3117-201ENST00000584034 78 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 AC105224.1-201ENST00000587055 421 ntBASIC2.34□□□□□ -2.04
USP42Q9H9J4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.34□□□□□ -2.04
USP42Q9H9J4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
USP42Q9H9J4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
USP42Q9H9J4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP42Q9H9J4 AC131280.1-202ENST00000624067 4211 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 RNU6-270P-201ENST00000364131 105 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP42Q9H9J4 RNU6-657P-201ENST00000383904 107 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
USP42Q9H9J4 MIR1290-201ENST00000408735 78 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 EIF1AXP1-201ENST00000419267 435 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 AC241584.1-201ENST00000438469 1241 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 RPS15AP7-201ENST00000439294 405 ntBASIC2.33□□□□□ -2.04
USP42Q9H9J4 DDX3P2-201ENST00000446138 111 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms