Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC013476.2-201ENST00000614456 459 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC010133.1-201ENST00000615809 842 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 LRRC77P-213ENST00000637727 880 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 AC007496.3-201ENST00000624987 3443 ntBASIC2.93□□□□□ -1.94
NKX3-1Q99801 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.93□□□□□ -1.94
NKX3-1Q99801 MFSD8-233ENST00000641482 4860 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 DEFB108F-201ENST00000344638 222 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 RNU6-50P-201ENST00000362356 103 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 SNORA20.2-201ENST00000383922 131 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 MIR493-201ENST00000385254 89 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL359634.1-202ENST00000404721 284 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 RNA5SP31-201ENST00000411144 127 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 HMGB3P11-201ENST00000440127 604 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 MTCYBP1-201ENST00000454315 1119 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL049714.1-201ENST00000466686 347 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL358832.1-201ENST00000497800 389 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC105252.1-201ENST00000503089 286 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC010265.1-201ENST00000513509 211 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 GMPSP1-201ENST00000514075 579 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 SCARNA20.6-201ENST00000517251 106 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 RNU6-840P-201ENST00000517275 65 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC104027.1-201ENST00000521887 300 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 FAM60DP-201ENST00000524174 632 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC008277.2-201ENST00000605196 797 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 NDUFA8P1-201ENST00000605525 367 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC069200.1-201ENST00000609511 323 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL161734.1-201ENST00000609720 557 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC103710.1-201ENST00000610003 901 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.92□□□□□ -1.94
NKX3-1Q99801 AC084035.1-201ENST00000634543 607 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
NKX3-1Q99801 SRP72P2-201ENST00000344851 1979 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 AL079305.1-201ENST00000623159 3008 ntBASIC2.92□□□□□ -1.94
NKX3-1Q99801 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
NKX3-1Q99801 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 MTND5P27-201ENST00000428871 1720 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 RPL7P26-201ENST00000333817 754 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 SNORD56.3-201ENST00000363507 71 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 RNA5SP387-201ENST00000364226 106 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 MIR514A1-201ENST00000385133 98 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 RNU2-62P-201ENST00000410868 191 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC093578.1-201ENST00000415219 368 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 MTND3P17-201ENST00000416968 344 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 ELOCP4-201ENST00000420090 333 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 FCF1P1-201ENST00000432690 571 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 ARPC3P1-201ENST00000437218 533 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 SNRPGP6-201ENST00000451124 220 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 RPS27P29-201ENST00000463110 252 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC106707.2-201ENST00000484182 374 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
NKX3-1Q99801 RPL37P25-201ENST00000507308 276 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC105914.1-201ENST00000511798 226 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 Vault.3-201ENST00000516676 95 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 RNA5SP468-201ENST00000516782 93 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 MIR3922-201ENST00000585192 84 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 SRGNP1-201ENST00000603392 451 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 DPPA3P3-201ENST00000603842 430 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 MIR98-201ENST00000606724 119 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AL110115.1-201ENST00000614396 364 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC090132.2-201ENST00000615881 347 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 SNHG22-203ENST00000617833 660 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC098679.4-201ENST00000624241 654 ntBASIC2.91□□□□□ -1.94
NKX3-1Q99801 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
NKX3-1Q99801 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms