Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SDAD1P2-201ENST00000441308 2028 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 ZNF680P1-201ENST00000436625 1469 ntBASIC4.24□□□□□ -1.73
NUP88Q99567 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
NUP88Q99567 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
NUP88Q99567 Y_RNA.22-201ENST00000362492 102 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 RNU6-179P-201ENST00000363350 107 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 Y_RNA.453-201ENST00000384223 109 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 RNVU1-14-201ENST00000384770 164 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 MIR514A1-201ENST00000385133 98 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 MIR1290-201ENST00000408735 78 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 RN7SKP140-201ENST00000411196 284 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 MRPL50P2-201ENST00000416821 482 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 USP9YP27-201ENST00000418455 438 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 AL353193.1-201ENST00000421444 268 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 AP000907.1-201ENST00000428428 510 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.23□□□□□ -1.73
NUP88Q99567 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.23□□□□□ -1.73
NUP88Q99567 NEFMP1-201ENST00000443423 1006 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.23□□□□□ -1.73
NUP88Q99567 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.23□□□□□ -1.73
NUP88Q99567 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.23□□□□□ -1.73
NUP88Q99567 FABP5P13-201ENST00000452144 328 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC4.23□□□□□ -1.73
NUP88Q99567 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC4.23□□□□□ -1.73
NUP88Q99567 ARL4AP2-201ENST00000507378 601 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.23□□□□□ -1.73
NUP88Q99567 OR5AQ1P-201ENST00000527596 927 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 AP001646.1-201ENST00000527936 915 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NUP88Q99567 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.23□□□□□ -1.73
NUP88Q99567 HMGB1P6-201ENST00000569046 646 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 MIR3690-201ENST00000580266 75 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 AC017083.3-201ENST00000609955 700 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 AC068944.2-201ENST00000610373 403 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 MIR7975-201ENST00000619350 68 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 U6.114-201ENST00000636407 96 ntBASIC4.23□□□□□ -1.73
NUP88Q99567 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.23□□□□□ -1.73
NUP88Q99567 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.22□□□□□ -1.73
NUP88Q99567 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.22□□□□□ -1.73
NUP88Q99567 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NUP88Q99567 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.22□□□□□ -1.73
NUP88Q99567 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.22□□□□□ -1.73
NUP88Q99567 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.22□□□□□ -1.73
NUP88Q99567 PRO1804-201ENST00000623780 2050 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 SNORA62.1-201ENST00000364287 154 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 DEFB109C-201ENST00000382575 264 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 DEFB109B-201ENST00000382656 264 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 Y_RNA.402-201ENST00000383972 102 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 Y_RNA.450-201ENST00000384198 113 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.22□□□□□ -1.73
NUP88Q99567 HMGB1P27-201ENST00000431429 603 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 MTATP6P16-201ENST00000434543 526 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 RPS15AP9-201ENST00000439856 381 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 TXNP1-201ENST00000441872 371 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 CYCSP35-201ENST00000451978 304 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.22□□□□□ -1.73
NUP88Q99567 RNU7-63P-201ENST00000459054 62 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 RPL37P6-201ENST00000460682 294 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
NUP88Q99567 AC126389.1-201ENST00000477436 290 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 HSPD1P15-201ENST00000505573 1122 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AC074250.1-201ENST00000511117 192 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.22□□□□□ -1.73
NUP88Q99567 Y_RNA.693-201ENST00000516641 110 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 RNA5SP468-201ENST00000516782 93 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 OR5AL2P-201ENST00000532185 920 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.22□□□□□ -1.73
NUP88Q99567 AC025678.1-201ENST00000567861 338 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AP001029.3-201ENST00000588063 596 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.22□□□□□ -1.73
NUP88Q99567 AC048347.1-201ENST00000624621 427 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.22□□□□□ -1.73
NUP88Q99567 AC244205.2-202ENST00000635781 342 ntBASIC4.22□□□□□ -1.73
NUP88Q99567 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.21□□□□□ -1.74
NUP88Q99567 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
NUP88Q99567 RNU6-1090P-201ENST00000364065 94 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 RNU6-1322P-201ENST00000364309 107 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
NUP88Q99567 RNU6-74P-201ENST00000384235 107 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AL591416.1-201ENST00000404015 867 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 CIR1P3-201ENST00000405137 479 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.21□□□□□ -1.74
NUP88Q99567 HMGB3P20-201ENST00000417997 600 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
NUP88Q99567 RPL27AP8-201ENST00000424277 446 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.21□□□□□ -1.74
NUP88Q99567 AL356867.1-201ENST00000429623 299 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 CYCSP4-201ENST00000429682 331 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 MRPS10P2-201ENST00000431226 381 ntBASIC4.21□□□□□ -1.74
NUP88Q99567 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.21□□□□□ -1.74
NUP88Q99567 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
NUP88Q99567 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.21□□□□□ -1.74
NUP88Q99567 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms