Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.682-201ENST00000516457 100 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 RNU7-51P-201ENST00000516560 62 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 HMGB1P41-201ENST00000520234 440 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AL163153.1-201ENST00000554223 283 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 NF1P5-201ENST00000588287 448 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC124303.1-201ENST00000605703 360 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 MIR6864-201ENST00000617935 70 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 AL359757.2-201ENST00000624309 274 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 MTND5P1-201ENST00000445440 1375 ntBASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
USHBP1Q8N6Y0 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 TAB3P1-202ENST00000452645 1634 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 LINC01109-201ENST00000603837 3081 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-525P-201ENST00000363685 104 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 Y_RNA.187-201ENST00000363918 113 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-641P-201ENST00000384006 107 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1029P-201ENST00000384109 107 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 PTMAP5-201ENST00000393073 333 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RPS3AP12-201ENST00000443616 753 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC107399.1-201ENST00000451226 265 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNU7-180P-201ENST00000459240 63 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC021146.2-201ENST00000504736 556 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RFPL4AP5-201ENST00000514977 504 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RN7SKP18-201ENST00000516005 275 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 SNORA74D-201ENST00000516404 141 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RNA5SP503-201ENST00000517047 117 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC093012.1-202ENST00000549403 582 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 GNRHR2P1-201ENST00000555315 631 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 SNORA62.6-201ENST00000606322 83 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC019193.3-201ENST00000609144 554 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AL132822.1-201ENST00000617063 513 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 MIR7975-201ENST00000619350 68 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 7SK.10-201ENST00000621414 298 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 AC011978.2-201ENST00000569835 2054 ntBASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
USHBP1Q8N6Y0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC007823.1-201ENST00000569932 1566 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 ZNF962P-201ENST00000443465 3140 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC244517.1-201ENST00000606030 2086 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 SNORA22B-201ENST00000383876 138 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MTCYBP4-201ENST00000401524 249 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MIR548K-201ENST00000408406 116 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC074085.1-201ENST00000413598 418 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 PRPS1P1-201ENST00000445305 876 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 HMGB3P22-202ENST00000451823 572 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MTND1P9-201ENST00000453775 944 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 SNRPFP3-201ENST00000457792 225 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 RPL31P61-201ENST00000496160 376 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 MTND4P7-201ENST00000523876 130 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 DEFB109D-201ENST00000529497 240 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 STX3-204ENST00000530221 534 ntTSL 5 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC092470.1-201ENST00000546187 132 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 XIAPP1-201ENST00000603162 600 ntBASIC5□□□□□ -1.61
USHBP1Q8N6Y0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5□□□□□ -1.61
USHBP1Q8N6Y0 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms