Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 HMGB1P27-201ENST00000431429 603 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AL590365.1-201ENST00000450788 243 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 RPS3AP43-201ENST00000479743 781 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC068724.1-201ENST00000487100 792 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC138853.1-201ENST00000503549 823 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 RNU6-927P-201ENST00000516199 100 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC022616.6-201ENST00000520479 119 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 ZNF519P3-201ENST00000557158 1032 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AL359999.1-201ENST00000604513 294 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC027807.2-201ENST00000616099 408 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AL603755.1-201ENST00000619504 163 ntBASIC3.3□□□□□ -1.88
PRPF39Q86UA1 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRPF39Q86UA1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 IL33-203ENST00000456383 2501 ntTSL 5 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 RNU6-1284P-201ENST00000363701 100 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AL031577.2-201ENST00000404133 280 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 TRIAP1P1-201ENST00000427062 225 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 RPS6P15-201ENST00000431996 751 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 FCF1P1-201ENST00000432690 571 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 MTATP6P30-201ENST00000443540 664 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 SSXP1-201ENST00000453640 473 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AC013267.1-201ENST00000458227 267 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AC109925.1-201ENST00000478069 331 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 MIR2682-201ENST00000580305 110 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 MIR4325-201ENST00000583049 90 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 MIR4293-201ENST00000584305 78 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AL157817.1-201ENST00000614264 790 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 AL162274.2-201ENST00000614406 332 ntBASIC3.29□□□□□ -1.88
PRPF39Q86UA1 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.29□□□□□ -1.88
PRPF39Q86UA1 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 MAPK10-362ENST00000641864 4484 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL353743.1-202ENST00000431724 1695 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RNA5SP374-201ENST00000362939 125 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 Y_RNA.245-201ENST00000364493 95 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RNU6-217P-201ENST00000384164 104 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RNA5SP354-201ENST00000391247 136 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 NDUFS5P1-201ENST00000405668 289 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 FCF1P10-201ENST00000407590 479 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 Z99497.1-201ENST00000421282 135 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL671855.1-201ENST00000446875 1203 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 Z99127.3-201ENST00000448158 395 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 KATNBL1P6-201ENST00000453433 915 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AP000797.1-201ENST00000478870 387 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC010486.2-201ENST00000505572 483 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RAC1P5-201ENST00000512182 576 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 RNA5SP217-201ENST00000515959 91 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 DUXAP5-201ENST00000529668 529 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC090888.1-201ENST00000561335 1141 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 WISP1-OT1-201ENST00000602893 642 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC108747.1-201ENST00000609508 535 ntBASIC3.28□□□□□ -1.88
PRPF39Q86UA1 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.28□□□□□ -1.88
PRPF39Q86UA1 AC135507.2-201ENST00000612443 309 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms