Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 SDAD1P1-202ENST00000524156 2051 ntBASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
RNF111Q6ZNA4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 Y_RNA.210-201ENST00000364161 110 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 Y_RNA.396-201ENST00000383949 103 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 MIR93-201ENST00000385024 80 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 U3.30-201ENST00000391308 210 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 GLULP6-201ENST00000399502 913 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL133270.1-201ENST00000402635 279 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 SNORA11B-201ENST00000408175 129 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL772161.1-201ENST00000439130 476 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC112492.4-201ENST00000456549 352 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 RPL37P6-201ENST00000460682 294 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 RNU6-475P-201ENST00000516073 104 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC090151.1-201ENST00000520784 730 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC133555.2-201ENST00000550213 292 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL355297.3-201ENST00000604082 446 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 RNU6-85P-201ENST00000605989 107 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 FAM27B-201ENST00000610601 213 ntBASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
RNF111Q6ZNA4 TLK1P1-201ENST00000456760 2440 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC015813.6-201ENST00000624409 5808 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 Y_RNA.106-201ENST00000363189 100 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RN7SKP103-201ENST00000363848 320 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RNU6-371P-201ENST00000364283 108 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 Y_RNA.257-201ENST00000364596 102 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RNU6-1329P-201ENST00000365664 107 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 DEFB109C-201ENST00000382575 264 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 DEFB109B-201ENST00000382656 264 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 Y_RNA.480-201ENST00000384364 102 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 SNORD73A-201ENST00000386062 65 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RNU6-817P-201ENST00000391083 104 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RNA5SP113-201ENST00000410486 84 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 SYF2P2-201ENST00000417620 583 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL645608.4-201ENST00000423619 154 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL138785.1-201ENST00000425821 331 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 HMGB1P9-201ENST00000429856 646 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RPS24P13-201ENST00000442520 397 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL591623.2-201ENST00000449978 222 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RPS5P7-201ENST00000456664 608 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC092324.1-201ENST00000468671 324 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RPS26P28-201ENST00000470806 348 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC231760.1-201ENST00000498002 260 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 RN7SKP258-201ENST00000517151 304 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AP000827.1-201ENST00000527814 258 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC022726.1-201ENST00000587475 207 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL109918.3-201ENST00000603072 338 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AC024940.4-201ENST00000605507 246 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL161616.1-201ENST00000611867 286 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL451142.2-201ENST00000429076 2090 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 ZNF72P-201ENST00000425869 1908 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 SMG1P6-201ENST00000532337 2930 ntBASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
RNF111Q6ZNA4 MAPK10-304ENST00000641341 3984 ntBASIC4.47□□□□□ -1.69
RNF111Q6ZNA4 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
RNF111Q6ZNA4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.47□□□□□ -1.69
RNF111Q6ZNA4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms