Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC019176.1-201ENST00000518519 225 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 HMGB1P46-201ENST00000520062 610 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC087481.2-201ENST00000565492 330 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 VN1R88P-201ENST00000596787 292 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC016911.1-201ENST00000613297 452 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC140725.3-201ENST00000616193 880 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 SNORD114-26-201ENST00000363543 72 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC092047.1-201ENST00000424997 240 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC092991.1-201ENST00000477176 376 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC069528.1-202ENST00000482888 637 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 RNU6-488P-201ENST00000515918 99 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 COX6CP3-201ENST00000580869 223 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC080078.3-201ENST00000605407 463 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC095031.1-201ENST00000623685 672 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AC090617.9-201ENST00000623751 147 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 AL513185.3-201ENST00000433335 1300 ntBASIC1.94□□□□□ -2.1
CCDC88AQ3V6T2 SNORA67.1-201ENST00000364749 141 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AC083799.1-201ENST00000366451 910 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 RPS4XP3-201ENST00000398541 413 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 UBE2V1P11-201ENST00000411559 285 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AL606495.1-201ENST00000422100 813 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 RPP40P1-201ENST00000426762 456 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AC104073.1-201ENST00000451988 151 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AL139109.1-201ENST00000455491 297 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 DPRXP5-201ENST00000604662 539 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AC016542.1-201ENST00000608259 493 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 uc_338.20-201ENST00000621563 178 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AL359740.1-201ENST00000624340 592 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 BX649567.1-201ENST00000642071 1134 ntBASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC88AQ3V6T2 AC087359.1-201ENST00000508335 1740 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 DSTNP4-201ENST00000399472 474 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 TMEM167AP1-201ENST00000423409 219 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 MTND5P8-201ENST00000449817 1083 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 OR5AQ1P-201ENST00000527596 927 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 MIR3921-201ENST00000577308 85 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 BX322635.1-201ENST00000605804 496 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC022709.1-201ENST00000615967 87 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AP006248.3-201ENST00000623580 594 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 SNORA27.3-201ENST00000364937 134 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 RNA5SP56-201ENST00000410277 118 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 RPL30P14-201ENST00000482744 348 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC008526.1-201ENST00000509149 338 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC084851.1-201ENST00000529105 249 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 AC245036.5-201ENST00000596330 847 ntBASIC1.92□□□□□ -2.1
CCDC88AQ3V6T2 NUP58P1-201ENST00000502546 1738 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 RPL23AP29-201ENST00000397284 453 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 SNRPEP2-201ENST00000397592 279 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 MTND4LP10-201ENST00000435146 291 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 snoU13.4-201ENST00000458916 104 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 HIGD1AP6-201ENST00000521833 279 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 OSBPL9P3-201ENST00000534523 595 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 AC090116.1-201ENST00000615679 446 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 AL449363.1-201ENST00000617815 186 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 MTCO1P18-201ENST00000455518 1419 ntBASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CCDC88AQ3V6T2 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 SNORA6-201ENST00000384033 151 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 AL031183.1-201ENST00000457667 207 ntBASIC1.9□□□□□ -2.1
CCDC88AQ3V6T2 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.9□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms