Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 snoU13.24-201ENST00000458998 104 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 AC105137.1-201ENST00000484355 562 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 AC091167.1-201ENST00000492017 396 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 MLLT10P2-201ENST00000506434 249 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA1P49639 RNU2-10P-201ENST00000516375 211 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNU6-1073P-201ENST00000517182 106 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC087369.1-201ENST00000520775 996 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 SUMO2P20-201ENST00000520803 283 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 HMGN1P28-201ENST00000521340 364 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HOXA1P49639 SNRPGP16-201ENST00000533275 226 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL359212.1-201ENST00000556608 614 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC008945.2-201ENST00000606056 604 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 SNHG22-203ENST00000617833 660 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL354950.2-201ENST00000617939 290 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC244100.1-202ENST00000621554 382 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXA1P49639 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXA1P49639 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HOXA1P49639 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 TAB3P1-202ENST00000452645 1634 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HOXA1P49639 HSPE1P11-201ENST00000339579 310 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNU6-600P-201ENST00000362524 99 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNA5SP383-201ENST00000362934 120 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNA5SP443-201ENST00000363083 132 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 SMIM11P1-201ENST00000369586 178 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNU6-908P-201ENST00000410160 94 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 Y_RNA.604-201ENST00000410574 102 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNU2-39P-201ENST00000410604 198 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 MRPL50P2-201ENST00000416821 482 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RPL30P16-201ENST00000419341 429 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 MTCYBP8-201ENST00000422855 651 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 RPL18P10-201ENST00000425606 538 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 HMGN2P20-201ENST00000437531 273 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXA1P49639 RPS24P6-201ENST00000452670 400 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 AL162395.1-201ENST00000457882 422 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 RPS4XP2-201ENST00000458402 793 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RPL21P8-201ENST00000465083 535 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC012181.1-201ENST00000479895 423 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RPL31P13-201ENST00000484151 370 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AL049874.1-201ENST00000489560 388 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXA1P49639 CEACAMP10-202ENST00000495431 496 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNA5SP401-201ENST00000515920 127 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNU6-835P-201ENST00000516974 104 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 RNU6-840P-201ENST00000517275 65 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AP003072.2-201ENST00000527756 676 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AP003034.1-201ENST00000534621 422 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC004024.1-201ENST00000549244 247 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 HIF1AP1-201ENST00000553642 175 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AL157687.1-201ENST00000554853 619 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC024619.4-201ENST00000580924 316 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC012443.1-201ENST00000605605 231 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC007619.2-201ENST00000605743 379 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AL355073.2-201ENST00000612106 557 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC110801.1-201ENST00000623590 212 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXA1P49639 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 AC093908.1-201ENST00000623125 8092 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 AC004925.1-201ENST00000624256 2706 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
HOXA1P49639 AL365440.1-201ENST00000436135 2167 ntBASIC3.08□□□□□ -1.92
HOXA1P49639 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms