Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC2.96□□□□□ -1.94
SOX3P41225 MIR2682-201ENST00000580305 110 ntBASIC2.96□□□□□ -1.94
SOX3P41225 MIR3682-201ENST00000581338 84 ntBASIC2.96□□□□□ -1.94
SOX3P41225 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SOX3P41225 uc_338.12-201ENST00000616344 181 ntBASIC2.96□□□□□ -1.94
SOX3P41225 AC139792.2-201ENST00000624218 587 ntBASIC2.96□□□□□ -1.94
SOX3P41225 SNORA50A-202ENST00000629536 136 ntBASIC2.96□□□□□ -1.94
SOX3P41225 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC2.96□□□□□ -1.94
SOX3P41225 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
SOX3P41225 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.96□□□□□ -1.94
SOX3P41225 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.96□□□□□ -1.94
SOX3P41225 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
SOX3P41225 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.95□□□□□ -1.94
SOX3P41225 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 RNU4-1-201ENST00000363925 141 ntBASIC2.95□□□□□ -1.94
SOX3P41225 SNORA23-201ENST00000365128 182 ntBASIC2.95□□□□□ -1.94
SOX3P41225 Y_RNA.359-201ENST00000365498 102 ntBASIC2.95□□□□□ -1.94
SOX3P41225 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.95□□□□□ -1.94
SOX3P41225 RNU6-1119P-201ENST00000384349 108 ntBASIC2.95□□□□□ -1.94
SOX3P41225 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SOX3P41225 MRPL42P2-201ENST00000403169 426 ntBASIC2.95□□□□□ -1.94
SOX3P41225 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.95□□□□□ -1.94
SOX3P41225 RNA5SP129-201ENST00000410276 118 ntBASIC2.95□□□□□ -1.94
SOX3P41225 UBE2FP1-201ENST00000416536 447 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.95□□□□□ -1.94
SOX3P41225 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 AC009961.2-201ENST00000435771 251 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 RPS24P1-201ENST00000438550 371 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC244505.5-201ENST00000443639 207 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 ELOCP30-201ENST00000447108 299 ntBASIC2.95□□□□□ -1.94
SOX3P41225 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 AC108860.1-201ENST00000484521 383 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC091435.1-201ENST00000505442 584 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SOX3P41225 AC109464.2-201ENST00000510242 943 ntBASIC2.95□□□□□ -1.94
SOX3P41225 RNA5SP468-201ENST00000516782 93 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.95□□□□□ -1.94
SOX3P41225 AC137800.2-201ENST00000574375 120 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC105224.1-201ENST00000587055 421 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AP001029.3-201ENST00000588063 596 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC103591.3-201ENST00000608684 209 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC138932.5-201ENST00000617759 563 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AC091903.1-201ENST00000624322 454 ntBASIC2.95□□□□□ -1.94
SOX3P41225 PISRT1-201ENST00000626175 531 ntBASIC2.95□□□□□ -1.94
SOX3P41225 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.95□□□□□ -1.94
SOX3P41225 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.95□□□□□ -1.94
SOX3P41225 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
SOX3P41225 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.95□□□□□ -1.94
SOX3P41225 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SOX3P41225 FARSBP1-201ENST00000435808 1778 ntBASIC2.95□□□□□ -1.94
SOX3P41225 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SOX3P41225 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SOX3P41225 GNG5P1-201ENST00000255500 204 ntBASIC2.94□□□□□ -1.94
SOX3P41225 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.94□□□□□ -1.94
SOX3P41225 RNU6-50P-201ENST00000362356 103 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RNY4P16-201ENST00000364768 94 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RNY3P13-201ENST00000365542 102 ntBASIC2.94□□□□□ -1.94
SOX3P41225 SNORA36C-201ENST00000384289 132 ntBASIC2.94□□□□□ -1.94
SOX3P41225 SNORD116-4-201ENST00000384733 96 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RNU2-8P-201ENST00000410727 190 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RNU2-62P-201ENST00000410868 191 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.94□□□□□ -1.94
SOX3P41225 AL663109.1-201ENST00000411498 844 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AC245054.2-201ENST00000415639 319 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.94□□□□□ -1.94
SOX3P41225 DLGAP5P1-201ENST00000430307 464 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AL353705.1-201ENST00000433468 480 ntBASIC2.94□□□□□ -1.94
SOX3P41225 MTCO3P5-201ENST00000433620 714 ntBASIC2.94□□□□□ -1.94
SOX3P41225 HMGB1P12-201ENST00000438594 598 ntBASIC2.94□□□□□ -1.94
SOX3P41225 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AC005094.1-201ENST00000440420 368 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RABEPKP1-201ENST00000440529 1026 ntBASIC2.94□□□□□ -1.94
SOX3P41225 CYCSP32-201ENST00000440548 321 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.94□□□□□ -1.94
SOX3P41225 UQCRHP3-201ENST00000451503 251 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 MTND1P12-201ENST00000455231 147 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RPL21P104-201ENST00000464143 478 ntBASIC2.94□□□□□ -1.94
SOX3P41225 HSPE1P6-201ENST00000479457 291 ntBASIC2.94□□□□□ -1.94
SOX3P41225 RPS4XP13-201ENST00000483219 789 ntBASIC2.94□□□□□ -1.94
SOX3P41225 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SOX3P41225 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AC105914.1-201ENST00000511798 226 ntBASIC2.94□□□□□ -1.94
SOX3P41225 ERHP1-201ENST00000523006 310 ntBASIC2.94□□□□□ -1.94
SOX3P41225 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC2.94□□□□□ -1.94
SOX3P41225 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.94□□□□□ -1.94
SOX3P41225 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms