Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL18A1P39060 AC079148.1-201ENST00000565944 819 ntBASIC2.1□□□□□ -2.07
COL18A1P39060 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.1□□□□□ -2.07
COL18A1P39060 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.1□□□□□ -2.07
COL18A1P39060 AC006329.2-201ENST00000611491 394 ntBASIC2.1□□□□□ -2.07
COL18A1P39060 AL354696.1-201ENST00000614652 497 ntBASIC2.1□□□□□ -2.07
COL18A1P39060 AL512506.2-201ENST00000624472 458 ntBASIC2.1□□□□□ -2.07
COL18A1P39060 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL18A1P39060 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
COL18A1P39060 ZNF849P-201ENST00000594711 1566 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
COL18A1P39060 AC111188.2-201ENST00000529697 1387 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 DBF4P1-201ENST00000412976 1892 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 RNU6-792P-201ENST00000363490 107 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 SNORA7.1-201ENST00000363750 139 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 MTCO2P31-201ENST00000402702 684 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 RNA5SP489-201ENST00000410986 109 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 MTND4LP10-201ENST00000435146 291 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AL451074.3-201ENST00000437709 472 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC2.09□□□□□ -2.07
COL18A1P39060 AC241584.1-201ENST00000438469 1241 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AL500527.1-201ENST00000448532 255 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AL353718.1-201ENST00000451028 517 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 PABPC1P3-201ENST00000469174 459 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AC090255.1-201ENST00000495779 349 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AC093767.1-201ENST00000504523 156 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AC025768.1-201ENST00000510057 267 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.09□□□□□ -2.07
COL18A1P39060 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.09□□□□□ -2.07
COL18A1P39060 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.09□□□□□ -2.07
COL18A1P39060 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.09□□□□□ -2.07
COL18A1P39060 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC2.09□□□□□ -2.07
COL18A1P39060 AC133794.1-201ENST00000602731 914 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AC092474.3-201ENST00000603022 568 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AP001330.4-201ENST00000604350 154 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AL118556.2-201ENST00000614375 824 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 AP006248.3-201ENST00000623580 594 ntBASIC2.09□□□□□ -2.07
COL18A1P39060 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
COL18A1P39060 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
COL18A1P39060 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
COL18A1P39060 RNU6-799P-201ENST00000363567 107 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 RNU6-173P-201ENST00000364215 104 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 RNU6-932P-201ENST00000391108 106 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 DEFB130D-201ENST00000426866 237 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 RPL31P54-201ENST00000429803 370 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC005345.1-201ENST00000431868 217 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 OR51B8P-201ENST00000449892 769 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC096751.1-202ENST00000502691 1067 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 KLRA1P-201ENST00000503499 986 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC006390.1-201ENST00000508068 283 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC112518.2-201ENST00000508565 425 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
COL18A1P39060 SNORA31.11-201ENST00000516528 139 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC106028.5-201ENST00000610332 395 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC097460.3-201ENST00000623099 442 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.08□□□□□ -2.08
COL18A1P39060 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
COL18A1P39060 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.08□□□□□ -2.08
COL18A1P39060 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.08□□□□□ -2.08
COL18A1P39060 RNU6-1027P-201ENST00000383998 107 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 RNU6-549P-201ENST00000384433 107 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 AL358075.3-201ENST00000426289 226 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC234064.1-201ENST00000436312 247 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.08□□□□□ -2.08
COL18A1P39060 MTND2P19-201ENST00000449129 1012 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 RPS26P21-201ENST00000475397 348 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC027338.1-201ENST00000514840 825 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 MTCO1P4-201ENST00000520516 1409 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC084851.1-201ENST00000529105 249 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 EEF1B2P4-201ENST00000551398 348 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.08□□□□□ -2.08
COL18A1P39060 AC093519.1-201ENST00000566109 298 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.08□□□□□ -2.08
COL18A1P39060 COX6CP3-201ENST00000580869 223 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.08□□□□□ -2.08
COL18A1P39060 RPL23AP78-201ENST00000599928 470 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AP002907.1-201ENST00000606361 1430 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 AL359740.1-201ENST00000624340 592 ntBASIC2.08□□□□□ -2.08
COL18A1P39060 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.07□□□□□ -2.08
COL18A1P39060 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
COL18A1P39060 SNORD82-201ENST00000365530 70 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 UBE2D3P2-201ENST00000424409 445 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 AL512661.1-201ENST00000434586 1253 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 PIGFP3-201ENST00000441918 722 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC2.07□□□□□ -2.08
COL18A1P39060 RPL32P14-201ENST00000463196 378 ntBASIC2.07□□□□□ -2.08
COL18A1P39060 AC008379.1-201ENST00000463655 464 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms