Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL7P49-201ENST00000471402 708 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.79□□□□□ -1.8
CIITAP33076 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CIITAP33076 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 MIR2276-201ENST00000516886 89 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.79□□□□□ -1.8
CIITAP33076 AP000907.2-201ENST00000530827 353 ntBASIC3.79□□□□□ -1.8
CIITAP33076 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.79□□□□□ -1.8
CIITAP33076 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.79□□□□□ -1.8
CIITAP33076 AC011611.1-201ENST00000552179 197 ntBASIC3.79□□□□□ -1.8
CIITAP33076 TGIF1P1-201ENST00000558095 802 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.79□□□□□ -1.8
CIITAP33076 SNORA59B-202ENST00000578183 701 ntBASIC3.79□□□□□ -1.8
CIITAP33076 MIR3146-201ENST00000580367 79 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.79□□□□□ -1.8
CIITAP33076 MIR4276-201ENST00000584832 70 ntBASIC3.79□□□□□ -1.8
CIITAP33076 XIAPP1-201ENST00000603162 600 ntBASIC3.79□□□□□ -1.8
CIITAP33076 SRGNP1-201ENST00000603392 451 ntBASIC3.79□□□□□ -1.8
CIITAP33076 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 AC017083.3-201ENST00000609955 700 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AL133173.2-201ENST00000614270 90 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CIITAP33076 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.79□□□□□ -1.8
CIITAP33076 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.79□□□□□ -1.8
CIITAP33076 AC002546.1-201ENST00000588041 2504 ntBASIC3.79□□□□□ -1.8
CIITAP33076 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
CIITAP33076 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CIITAP33076 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.78□□□□□ -1.8
CIITAP33076 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CIITAP33076 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CIITAP33076 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CIITAP33076 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CIITAP33076 Y_RNA.1-201ENST00000352915 104 ntBASIC3.78□□□□□ -1.8
CIITAP33076 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CIITAP33076 RNY4P14-201ENST00000363656 96 ntBASIC3.78□□□□□ -1.8
CIITAP33076 RNU6-169P-201ENST00000365336 107 ntBASIC3.78□□□□□ -1.8
CIITAP33076 MIR19A-201ENST00000384878 82 ntBASIC3.78□□□□□ -1.8
CIITAP33076 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CIITAP33076 RNA5SP129-201ENST00000410276 118 ntBASIC3.78□□□□□ -1.8
CIITAP33076 RNU2-47P-201ENST00000410649 186 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC126124.2-201ENST00000413542 321 ntBASIC3.78□□□□□ -1.8
CIITAP33076 USP9YP6-201ENST00000413550 854 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC092447.6-201ENST00000414578 210 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AL353193.1-201ENST00000421444 268 ntBASIC3.78□□□□□ -1.8
CIITAP33076 DUTP6-201ENST00000425573 462 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.78□□□□□ -1.8
CIITAP33076 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.78□□□□□ -1.8
CIITAP33076 MTND1P12-201ENST00000455231 147 ntBASIC3.78□□□□□ -1.8
CIITAP33076 RNU7-170P-201ENST00000459303 61 ntBASIC3.78□□□□□ -1.8
CIITAP33076 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.78□□□□□ -1.8
CIITAP33076 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.78□□□□□ -1.8
CIITAP33076 Vault.3-201ENST00000516676 95 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC107934.2-201ENST00000518653 310 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.78□□□□□ -1.8
CIITAP33076 OR5AQ1P-201ENST00000527596 927 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.78□□□□□ -1.8
CIITAP33076 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.78□□□□□ -1.8
CIITAP33076 SETP2-201ENST00000553886 926 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.78□□□□□ -1.8
CIITAP33076 AL845331.3-202ENST00000562856 261 ntBASIC3.78□□□□□ -1.8
CIITAP33076 HMGB1P33-201ENST00000563485 527 ntBASIC3.78□□□□□ -1.8
CIITAP33076 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC3.78□□□□□ -1.8
CIITAP33076 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.78□□□□□ -1.8
CIITAP33076 AC121334.2-201ENST00000605387 271 ntBASIC3.78□□□□□ -1.8
CIITAP33076 MIR98-201ENST00000606724 119 ntBASIC3.78□□□□□ -1.8
CIITAP33076 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.78□□□□□ -1.8
CIITAP33076 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.78□□□□□ -1.8
CIITAP33076 AC112204.3-201ENST00000623822 332 ntBASIC3.78□□□□□ -1.8
CIITAP33076 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.78□□□□□ -1.8
CIITAP33076 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CIITAP33076 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
CIITAP33076 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
CIITAP33076 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CIITAP33076 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.77□□□□□ -1.81
CIITAP33076 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.77□□□□□ -1.81
CIITAP33076 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CIITAP33076 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CIITAP33076 Y_RNA.9-201ENST00000362354 101 ntBASIC3.77□□□□□ -1.81
CIITAP33076 RNU6-1090P-201ENST00000364065 94 ntBASIC3.77□□□□□ -1.81
CIITAP33076 SNORD46.1-201ENST00000364139 104 ntBASIC3.77□□□□□ -1.81
CIITAP33076 Y_RNA.303-201ENST00000364998 94 ntBASIC3.77□□□□□ -1.81
CIITAP33076 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.77□□□□□ -1.81
CIITAP33076 MRPL42P2-201ENST00000403169 426 ntBASIC3.77□□□□□ -1.81
CIITAP33076 RNU4-65P-201ENST00000410473 140 ntBASIC3.77□□□□□ -1.81
CIITAP33076 RNA5SP120-201ENST00000410900 112 ntBASIC3.77□□□□□ -1.81
CIITAP33076 RPL23AP82-202ENST00000427528 469 ntBASIC3.77□□□□□ -1.81
CIITAP33076 TIMM9P3-201ENST00000428659 274 ntBASIC3.77□□□□□ -1.81
CIITAP33076 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.77□□□□□ -1.81
CIITAP33076 USP9YP15-201ENST00000442391 422 ntBASIC3.77□□□□□ -1.81
CIITAP33076 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.77□□□□□ -1.81
CIITAP33076 snoU13.22-201ENST00000459428 104 ntBASIC3.77□□□□□ -1.81
CIITAP33076 CENPBD1P1-201ENST00000464061 469 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms