Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.21□□□□□ -1.74
SMARCA1P28370 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.21□□□□□ -1.74
SMARCA1P28370 KLHL2P1-201ENST00000508691 521 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 SNORD27.1-201ENST00000516319 72 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RNU2-10P-201ENST00000516375 211 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RNU6-358P-201ENST00000516564 75 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 HMGN1P28-201ENST00000521340 364 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.21□□□□□ -1.74
SMARCA1P28370 FAM60DP-201ENST00000524174 632 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 OR4R1P-201ENST00000529879 463 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.21□□□□□ -1.74
SMARCA1P28370 HMGB1P6-201ENST00000569046 646 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC008752.3-201ENST00000588113 712 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AL162413.1-201ENST00000603198 110 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AL603758.1-201ENST00000618654 241 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AL360181.4-201ENST00000621752 134 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 FER-210ENST00000628534 558 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.21□□□□□ -1.74
SMARCA1P28370 GABPAP-201ENST00000419271 1356 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SMARCA1P28370 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 AL356274.2-201ENST00000624379 3752 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
SMARCA1P28370 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
SMARCA1P28370 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 HSPE1P11-201ENST00000339579 310 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 RNU5E-4P-201ENST00000364931 120 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AL359837.1-201ENST00000381357 287 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 MIR200C-201ENST00000384980 68 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 AL591416.1-201ENST00000404015 867 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 HSPE1P26-201ENST00000405341 275 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 RPS3AP24-201ENST00000407896 734 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.2□□□□□ -1.74
SMARCA1P28370 NEK4P1-201ENST00000433383 879 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC004866.2-201ENST00000438285 481 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 GAPDHP27-201ENST00000447427 1020 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AL162389.1-201ENST00000449233 177 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 VN1R17P-201ENST00000472048 1090 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC078785.3-201ENST00000476607 425 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.2□□□□□ -1.74
SMARCA1P28370 MLLT10P2-201ENST00000506434 249 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 SNORA40.12-201ENST00000516329 111 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC008489.1-201ENST00000524271 483 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.2□□□□□ -1.74
SMARCA1P28370 AL121579.1-201ENST00000555129 305 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.2□□□□□ -1.74
SMARCA1P28370 MIR4444-1-201ENST00000581696 74 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 MIR4444-2-201ENST00000584390 74 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.2□□□□□ -1.74
SMARCA1P28370 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.2□□□□□ -1.74
SMARCA1P28370 KLKP1-201ENST00000595979 403 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC244100.1-202ENST00000621554 382 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AC048347.1-201ENST00000624621 427 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 AL008636.1-201ENST00000625038 1018 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.2□□□□□ -1.74
SMARCA1P28370 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 AL049781.1-201ENST00000623195 3585 ntBASIC4.2□□□□□ -1.74
SMARCA1P28370 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
SMARCA1P28370 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
SMARCA1P28370 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SMARCA1P28370 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
SMARCA1P28370 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 SNORD9-201ENST00000362566 104 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 RNU6-223P-201ENST00000362830 107 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 RNU5E-6P-201ENST00000365574 115 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 RNU6-877P-201ENST00000383868 107 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 SNORA69-201ENST00000383895 132 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 MIR23B-201ENST00000384832 97 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 RNU2-43P-201ENST00000410306 190 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC009237.5-201ENST00000414271 501 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC138393.2-201ENST00000414742 246 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 AL139413.1-201ENST00000421309 217 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 MTCO1P39-201ENST00000426148 480 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC079780.1-201ENST00000428259 207 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.19□□□□□ -1.74
SMARCA1P28370 CYCSP43-201ENST00000438233 310 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.19□□□□□ -1.74
SMARCA1P28370 MTCO3P18-201ENST00000440206 761 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC016691.1-201ENST00000441321 413 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.19□□□□□ -1.74
SMARCA1P28370 SNRPGP3-201ENST00000469405 227 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AL049830.2-201ENST00000480072 201 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SMARCA1P28370 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.19□□□□□ -1.74
SMARCA1P28370 AC026801.2-201ENST00000515352 425 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 RN7SKP83-201ENST00000516512 178 ntBASIC4.19□□□□□ -1.74
SMARCA1P28370 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms