Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU7-63P-201ENST00000459054 62 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 snoU13.22-201ENST00000459428 104 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 NIPA2P2-201ENST00000496376 1083 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 MTCO3P9-201ENST00000506989 781 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD9P28356 AC005921.1-201ENST00000510589 286 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD9P28356 FTH1P9-201ENST00000513251 355 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD9P28356 AC008489.1-201ENST00000524271 483 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD9P28356 AP004242.1-201ENST00000533701 349 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD9P28356 AC125611.2-201ENST00000551907 647 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXD9P28356 MIR3944-201ENST00000581277 108 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
HOXD9P28356 GLUD1P4-201ENST00000590914 418 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 KLKP1-201ENST00000595979 403 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC064836.2-201ENST00000609491 462 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC103710.2-201ENST00000609912 942 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC135507.2-201ENST00000612443 309 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC004825.2-201ENST00000616634 455 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AL354950.2-201ENST00000617939 290 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC002550.2-201ENST00000621246 394 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC040168.1-201ENST00000623594 991 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD9P28356 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD9P28356 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD9P28356 AL365440.1-201ENST00000436135 2167 ntBASIC3.7□□□□□ -1.82
HOXD9P28356 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD9P28356 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXD9P28356 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD9P28356 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXD9P28356 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD9P28356 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD9P28356 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD9P28356 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD9P28356 RNA5SP322-201ENST00000363617 119 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 SNORD46.1-201ENST00000364139 104 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 SNORA70.4-201ENST00000365509 134 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 RNY3P13-201ENST00000365542 102 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXD9P28356 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD9P28356 RPL23AP48-201ENST00000406913 488 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD9P28356 MTCO3P46-201ENST00000425787 232 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXD9P28356 AL159987.2-201ENST00000432754 307 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 TAAR7P-201ENST00000436141 242 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD9P28356 FTH1P1-201ENST00000437933 532 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 PRDX3P3-201ENST00000447765 522 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD9P28356 AC108059.3-201ENST00000456388 214 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC233702.1-201ENST00000482905 502 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL163973.1-201ENST00000484753 577 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 RPS3AP50-201ENST00000487064 803 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC020893.1-201ENST00000502452 580 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC023141.12-201ENST00000512399 199 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD9P28356 AC105417.1-201ENST00000514691 285 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 RNU2-58P-201ENST00000516403 183 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC103843.2-201ENST00000530523 682 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD9P28356 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.69□□□□□ -1.82
HOXD9P28356 MIR4795-201ENST00000584182 89 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC006116.10-201ENST00000591836 581 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL132765.2-201ENST00000610812 351 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.69□□□□□ -1.82
HOXD9P28356 AC084757.4-201ENST00000616350 526 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 AC112204.3-201ENST00000623822 332 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD9P28356 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD9P28356 RIOK3P1-201ENST00000418778 1528 ntBASIC3.69□□□□□ -1.82
HOXD9P28356 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXD9P28356 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXD9P28356 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD9P28356 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXD9P28356 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 Y_RNA.22-201ENST00000362492 102 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RNU6-1249P-201ENST00000363237 111 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 U3.11-201ENST00000364476 212 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 SNORA51.2-201ENST00000364595 132 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RNU6-996P-201ENST00000365438 107 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RNU4-48P-201ENST00000365559 182 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 SNORD51-201ENST00000384320 80 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXD9P28356 AL591416.1-201ENST00000404015 867 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL356432.1-201ENST00000405809 419 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 RN7SKP32-201ENST00000410167 303 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXD9P28356 ATP5JP1-201ENST00000431631 322 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 RPL21P112-201ENST00000434403 463 ntBASIC3.68□□□□□ -1.82
HOXD9P28356 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXD9P28356 AL138799.3-201ENST00000438968 350 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms