Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH3P20585 SNORD56.3-201ENST00000363507 71 ntBASIC3.23□□□□□ -1.89
MSH3P20585 RN7SKP226-201ENST00000364912 300 ntBASIC3.23□□□□□ -1.89
MSH3P20585 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH3P20585 RNU6-648P-201ENST00000410190 107 ntBASIC3.23□□□□□ -1.89
MSH3P20585 RNU2-8P-201ENST00000410727 190 ntBASIC3.23□□□□□ -1.89
MSH3P20585 ELOCP17-201ENST00000414751 326 ntBASIC3.23□□□□□ -1.89
MSH3P20585 USP9YP36-201ENST00000424581 829 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.23□□□□□ -1.89
MSH3P20585 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 AC010587.1-201ENST00000505809 469 ntBASIC3.23□□□□□ -1.89
MSH3P20585 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
MSH3P20585 RNU6-798P-201ENST00000516912 103 ntBASIC3.23□□□□□ -1.89
MSH3P20585 MTND1P5-201ENST00000517906 940 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AL133271.1-201ENST00000538229 291 ntBASIC3.23□□□□□ -1.89
MSH3P20585 TRAV37-201ENST00000553906 342 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.23□□□□□ -1.89
MSH3P20585 COX6CP3-201ENST00000580869 223 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.23□□□□□ -1.89
MSH3P20585 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
MSH3P20585 AC136475.10-201ENST00000620253 385 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AC009268.2-201ENST00000621925 457 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AL353748.2-201ENST00000622148 471 ntBASIC3.23□□□□□ -1.89
MSH3P20585 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
MSH3P20585 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH3P20585 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.23□□□□□ -1.89
MSH3P20585 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSH3P20585 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSH3P20585 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
MSH3P20585 AL136164.4-201ENST00000625013 2135 ntBASIC3.22□□□□□ -1.89
MSH3P20585 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
MSH3P20585 RNU5E-1-201ENST00000362477 120 ntBASIC3.22□□□□□ -1.89
MSH3P20585 RNY4P16-201ENST00000364768 94 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 RNU6-637P-201ENST00000384050 107 ntBASIC3.22□□□□□ -1.89
MSH3P20585 RNU6-754P-201ENST00000391166 107 ntBASIC3.22□□□□□ -1.89
MSH3P20585 RNA5SP44-201ENST00000410446 133 ntBASIC3.22□□□□□ -1.89
MSH3P20585 RNU6-516P-201ENST00000411381 104 ntBASIC3.22□□□□□ -1.89
MSH3P20585 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 AC063979.1-201ENST00000415539 377 ntBASIC3.22□□□□□ -1.89
MSH3P20585 CCDC58P2-201ENST00000417131 366 ntBASIC3.22□□□□□ -1.89
MSH3P20585 PIGFP2-201ENST00000421400 651 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 TRIAP1P1-201ENST00000427062 225 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC005326.1-201ENST00000429197 123 ntBASIC3.22□□□□□ -1.89
MSH3P20585 TIMM9P1-201ENST00000436122 256 ntBASIC3.22□□□□□ -1.89
MSH3P20585 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSH3P20585 AC006028.1-201ENST00000438379 402 ntBASIC3.22□□□□□ -1.89
MSH3P20585 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.22□□□□□ -1.89
MSH3P20585 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 NDUFAF4P4-201ENST00000454883 502 ntBASIC3.22□□□□□ -1.89
MSH3P20585 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 SRRM1P2-201ENST00000464531 1192 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC091153.1-201ENST00000466297 402 ntBASIC3.22□□□□□ -1.89
MSH3P20585 RPS3AP17-201ENST00000472594 777 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 RBM43P1-201ENST00000476891 1081 ntBASIC3.22□□□□□ -1.89
MSH3P20585 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.22□□□□□ -1.89
MSH3P20585 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
MSH3P20585 AC107401.1-201ENST00000503426 685 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC004062.1-201ENST00000509926 645 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 AC068657.1-201ENST00000520807 306 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC3.22□□□□□ -1.89
MSH3P20585 AC016957.1-201ENST00000534895 309 ntBASIC3.22□□□□□ -1.89
MSH3P20585 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 KC877982.1-201ENST00000602313 470 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC007038.2-201ENST00000608095 740 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC004908.2-201ENST00000609090 574 ntBASIC3.22□□□□□ -1.89
MSH3P20585 AC245517.5-201ENST00000611529 162 ntBASIC3.22□□□□□ -1.89
MSH3P20585 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.22□□□□□ -1.89
MSH3P20585 MTCO1P9-201ENST00000505577 1534 ntBASIC3.22□□□□□ -1.89
MSH3P20585 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSH3P20585 MTND5P1-201ENST00000445440 1375 ntBASIC3.22□□□□□ -1.89
MSH3P20585 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
MSH3P20585 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.22□□□□□ -1.89
MSH3P20585 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
MSH3P20585 AC004972.1-201ENST00000623934 2209 ntBASIC3.21□□□□□ -1.89
MSH3P20585 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
MSH3P20585 OR5J1P-201ENST00000313544 939 ntBASIC3.21□□□□□ -1.9
MSH3P20585 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSH3P20585 Y_RNA.6-201ENST00000362350 114 ntBASIC3.21□□□□□ -1.9
MSH3P20585 RNU5A-8P-201ENST00000364102 114 ntBASIC3.21□□□□□ -1.9
MSH3P20585 SNORD46.1-201ENST00000364139 104 ntBASIC3.21□□□□□ -1.9
MSH3P20585 RNU6-517P-201ENST00000384362 110 ntBASIC3.21□□□□□ -1.9
MSH3P20585 RNA5SP120-201ENST00000410900 112 ntBASIC3.21□□□□□ -1.9
MSH3P20585 MTND3P17-201ENST00000416968 344 ntBASIC3.21□□□□□ -1.9
MSH3P20585 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH3P20585 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.21□□□□□ -1.9
MSH3P20585 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms