Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC068831.7-201ENST00000616954 363 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RMST_9.1-201ENST00000619945 193 ntBASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
CCDC9Q9Y3X0 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC9Q9Y3X0 SNORD115-7-201ENST00000365306 82 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-1029P-201ENST00000384109 107 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-1158P-201ENST00000391167 107 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 CIR1P3-201ENST00000405137 479 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 ELOCP14-201ENST00000428070 331 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 GPM6BP2-201ENST00000432046 144 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 HSPD1P21-201ENST00000436541 245 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 ELOCP7-201ENST00000439968 331 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 GPM6BP1-201ENST00000446387 144 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL031584.1-201ENST00000447169 754 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL590664.1-201ENST00000448065 339 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 FDX1P2-201ENST00000450769 375 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC083798.1-201ENST00000472671 131 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 RN7SL293P-201ENST00000481765 281 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 RPL36AP51-201ENST00000487216 318 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 MTND4LP26-201ENST00000518144 282 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL157687.1-201ENST00000554853 619 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 MIR3124-201ENST00000582636 67 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AP001486.3-201ENST00000615334 372 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL354950.2-201ENST00000617939 290 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AC011155.2-201ENST00000623202 216 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 AL136164.4-201ENST00000625013 2135 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 SCARNA15.3-201ENST00000626315 122 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 SCARNA4.1-201ENST00000628597 123 ntBASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
CCDC9Q9Y3X0 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AC139713.2-215ENST00000641428 5037 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RNA5SP307-201ENST00000362863 116 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 Y_RNA.402-201ENST00000383972 102 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RNA5SP111-201ENST00000411386 101 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 USP9YP6-201ENST00000413550 854 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 SYF2P2-201ENST00000417620 583 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 USP9YP27-201ENST00000418455 438 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RPL23AP69-201ENST00000431134 458 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 DPPA3P1-201ENST00000448050 469 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-261P-201ENST00000459506 102 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RPL23AP62-201ENST00000463396 453 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 HMGN1P11-201ENST00000508668 303 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-718P-201ENST00000516166 105 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 SNORA40.12-201ENST00000516329 111 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AC008752.3-201ENST00000588113 712 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AL670379.4-201ENST00000605279 254 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AC005344.1-201ENST00000613391 459 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 MIR8069-1-201ENST00000616627 86 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 MIR8069-2-201ENST00000621412 86 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AL160394.1-201ENST00000624765 724 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 PSMD5-AS1-215ENST00000640622 205 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 AP004289.2-201ENST00000444413 1457 ntBASIC5.45□□□□□ -1.54
CCDC9Q9Y3X0 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC022336.2-201ENST00000568966 2538 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 ANKRD20A10P-201ENST00000457591 1515 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC103710.2-202ENST00000641454 2853 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 RNU6-996P-201ENST00000365438 107 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 RNA5SP151-201ENST00000365632 117 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AC012498.1-201ENST00000424037 437 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 ZNF863P-201ENST00000426746 417 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AP000907.1-201ENST00000428428 510 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 AL592045.1-201ENST00000429867 352 ntBASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC9Q9Y3X0 HMGB3P11-201ENST00000440127 604 ntBASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms