Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SNORA31-201ENST00000362607 130 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 Y_RNA.38-201ENST00000362617 102 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RNA5SP124-201ENST00000362739 110 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RNA5SP72-201ENST00000364442 117 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RNU6-335P-201ENST00000364563 113 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 Y_RNA.295-201ENST00000364918 102 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SNORD6-201ENST00000365444 73 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RPS3AP24-201ENST00000407896 734 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 EI24P1-201ENST00000416584 867 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 MTCO1P39-201ENST00000426148 480 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 CALM1P1-201ENST00000442082 433 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 DPPA3P1-201ENST00000448050 469 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SNRPGP6-201ENST00000451124 220 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SNORD97-201ENST00000459187 142 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AP001086.1-201ENST00000494882 321 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 MTCYBP18-201ENST00000501056 747 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RNU7-51P-201ENST00000516560 62 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 RNU6-1231P-201ENST00000517185 103 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 Z84480.1-201ENST00000605131 311 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC103710.3-201ENST00000608157 948 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SNHG22-203ENST00000617833 660 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AL357559.1-201ENST00000622228 274 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AL008636.1-201ENST00000625038 1018 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 MIR4275-201ENST00000636486 87 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AC009093.8-201ENST00000641769 292 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 CKAP2P1-201ENST00000555477 2049 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 AL157700.1-201ENST00000561973 1432 ntBASIC3.76□□□□□ -1.81
VPS4AQ9UN37 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4AQ9UN37 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC009812.4-201ENST00000569134 1805 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 MTND5P17-201ENST00000418405 1603 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RNU6-451P-201ENST00000362921 107 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RNY3P3-201ENST00000363816 102 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RNA5SP189-201ENST00000364920 115 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 SNORA73.2-201ENST00000364946 201 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RNU6-867P-201ENST00000364956 107 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RNU4-48P-201ENST00000365559 182 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL136372.1-201ENST00000403060 228 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL359634.1-202ENST00000404721 284 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RPL21P24-201ENST00000413752 448 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC138393.2-201ENST00000414742 246 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 OR51A5P-201ENST00000415429 942 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 UBE2FP1-201ENST00000416536 447 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 ZNF90P2-204ENST00000419323 1075 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL109913.1-201ENST00000421173 514 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RPL36AP6-201ENST00000435770 321 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC004866.2-201ENST00000438285 481 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 RPS24P6-201ENST00000452670 400 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC026801.2-201ENST00000515352 425 ntBASIC3.75□□□□□ -1.81
VPS4AQ9UN37 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 671.2 ms