Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 snoU13.22-201ENST00000459428 104 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 MEMO1P3-201ENST00000459811 302 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 RPS3AP14-201ENST00000483907 780 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 LARP1BP2-201ENST00000486594 519 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 RPS15AP34-201ENST00000487776 387 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC107222.1-201ENST00000510899 637 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC243972.3-201ENST00000539655 198 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC078814.3-201ENST00000553036 491 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 MIR4658-201ENST00000584344 65 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC135507.2-201ENST00000612443 309 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC011890.2-201ENST00000613393 294 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AL357080.1-201ENST00000617394 239 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC002550.2-201ENST00000621246 394 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC005539.1-201ENST00000443768 1479 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 MTCO1P9-201ENST00000505577 1534 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 AC093536.2-201ENST00000565257 1406 ntBASIC2.17□□□□□ -2.06
EXOSC4Q9NPD3 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 OR4G2P-202ENST00000641004 1759 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL390862.1-201ENST00000635467 1469 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 RNU5E-8P-201ENST00000363502 116 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 RNA5SP456-201ENST00000364002 114 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 ANAPC10P1-201ENST00000395991 556 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 USP9YP33-201ENST00000412220 421 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 SPA17P1-201ENST00000416656 452 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 CCDC58P2-201ENST00000417131 366 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC018630.2-202ENST00000422992 927 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL953862.1-201ENST00000423016 168 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 PPP1R11P2-201ENST00000423543 382 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 NANOGP5-201ENST00000424456 877 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 USP9YP35-201ENST00000435696 412 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL445687.1-201ENST00000439946 251 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC104389.3-201ENST00000445629 235 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 PTENP1-201ENST00000447117 1215 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 DPPA3P1-201ENST00000448050 469 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 SNORD109B-201ENST00000458961 67 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 SNORD109A-201ENST00000459128 67 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 HSPE1P6-201ENST00000479457 291 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 UBE2V1P12-201ENST00000503954 474 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL161756.2-201ENST00000604597 246 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC080013.3-201ENST00000606839 578 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL136370.1-201ENST00000608166 691 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC004852.3-201ENST00000614131 326 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC079395.3-201ENST00000615161 484 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC006386.1-201ENST00000619436 415 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC109809.1-201ENST00000619665 545 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AC092608.2-201ENST00000624427 218 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.16□□□□□ -2.06
EXOSC4Q9NPD3 AL049641.1-201ENST00000441055 1948 ntBASIC2.15□□□□□ -2.06
EXOSC4Q9NPD3 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
EXOSC4Q9NPD3 RNU6-97P-201ENST00000363387 104 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 SNORA36C-201ENST00000384289 132 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 RNU6-925P-201ENST00000384629 104 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 AC096664.2-201ENST00000411843 406 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 COTL1P1-201ENST00000422309 375 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 MTCO2P20-201ENST00000437339 673 ntBASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.15□□□□□ -2.07
EXOSC4Q9NPD3 FGF7P5-201ENST00000441829 291 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms