Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC093519.1-201ENST00000566109 298 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC090616.3-201ENST00000582184 217 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC015688.2-201ENST00000584523 262 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC040174.2-201ENST00000602701 465 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.6-201ENST00000603753 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.11-201ENST00000604059 253 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.10-201ENST00000604330 253 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AC008162.1-201ENST00000604718 254 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.1-201ENST00000604752 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.2-201ENST00000604983 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.5-201ENST00000605253 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.4-201ENST00000605279 254 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.12-201ENST00000605291 253 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.8-201ENST00000605353 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.9-201ENST00000605428 253 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL670379.7-201ENST00000605823 252 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 AL592148.2-201ENST00000612210 372 ntBASIC2.4□□□□□ -2.03
USP42Q9H9J4 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
USP42Q9H9J4 DEFB108F-201ENST00000344638 222 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 RNA5SP138-201ENST00000365098 114 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC096533.1-201ENST00000411645 353 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AL136133.1-201ENST00000413694 376 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 RPL23AP76-201ENST00000441860 458 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 RNF2P1-201ENST00000442955 1010 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 DPPA3P1-201ENST00000448050 469 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 SNORA25.15-201ENST00000516487 89 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 RNU1-40P-201ENST00000516816 164 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 RNU1-97P-201ENST00000516872 164 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 RNU6-798P-201ENST00000516912 103 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 DEFB108D-201ENST00000527787 222 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 CR383656.7-201ENST00000548164 174 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 ACTR3BP3-201ENST00000565577 979 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC010546.1-201ENST00000569391 485 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.39□□□□□ -2.03
USP42Q9H9J4 DUXAP10-204ENST00000612052 616 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC004852.3-201ENST00000614131 326 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AC073308.1-201ENST00000623696 305 ntBASIC2.39□□□□□ -2.03
USP42Q9H9J4 AL022578.1-201ENST00000439330 1433 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 MTCO1P23-201ENST00000415223 1526 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP42Q9H9J4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP42Q9H9J4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
USP42Q9H9J4 ZNF519P1-201ENST00000449011 1626 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP42Q9H9J4 SNORD116-23-201ENST00000384645 92 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AL035405.1-201ENST00000400795 710 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 RNU4-62P-201ENST00000410125 130 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 PSMA6P3-201ENST00000428242 164 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 THAP5P1-201ENST00000439089 262 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AL096803.2-201ENST00000450032 677 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AC092155.2-201ENST00000454675 477 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 RPL31P41-201ENST00000477967 372 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.38□□□□□ -2.03
USP42Q9H9J4 AC010468.3-201ENST00000508225 458 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 RNU6-250P-201ENST00000516958 103 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.38□□□□□ -2.03
USP42Q9H9J4 FAM92A1P1-201ENST00000528023 890 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.38□□□□□ -2.03
USP42Q9H9J4 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
USP42Q9H9J4 OR4K8P-201ENST00000578842 1048 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AC002984.1-201ENST00000591692 448 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 AL671309.1-201ENST00000603750 544 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 VN1R74P-201ENST00000613259 503 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.38□□□□□ -2.03
USP42Q9H9J4 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.38□□□□□ -2.03
USP42Q9H9J4 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 OR4G11P-202ENST00000642116 1414 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 RNA5SP393-201ENST00000363423 117 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 RNU6-619P-201ENST00000365146 108 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 RNU6-481P-201ENST00000384194 107 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
USP42Q9H9J4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 AL050341.1-201ENST00000447743 313 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 MTCO1P48-201ENST00000448024 1096 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 RPL32P14-201ENST00000463196 378 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 RPL21P47-201ENST00000483696 477 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
USP42Q9H9J4 OR5AK1P-201ENST00000524837 922 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
USP42Q9H9J4 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 MIR4255-201ENST00000579351 72 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 OR1M4P-201ENST00000589199 287 ntBASIC2.37□□□□□ -2.03
USP42Q9H9J4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.37□□□□□ -2.03
USP42Q9H9J4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
USP42Q9H9J4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
USP42Q9H9J4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms