Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC093783.1-201ENST00000612976 329 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 TUG1_2.1-201ENST00000614234 87 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL110115.1-201ENST00000614396 364 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC013476.2-201ENST00000614456 459 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AC007256.1-201ENST00000392253 2765 ntBASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
CCDC3Q9BQI4 AL390237.1-201ENST00000404226 1415 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MIR30E-201ENST00000362104 92 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 Y_RNA.201-201ENST00000364052 96 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 SNORA36C-201ENST00000384289 132 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 SNORA44-201ENST00000384584 132 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 USP9YP13-201ENST00000417797 480 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 YPEL5P1-201ENST00000419731 367 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 RPL35AP12-201ENST00000425362 338 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC236972.1-201ENST00000433225 199 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 SSXP1-201ENST00000453640 473 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC004801.2-202ENST00000463559 283 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MTND4LP3-201ENST00000468320 276 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 HSPE1P6-201ENST00000479457 291 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC109464.2-201ENST00000510242 943 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MIR2276-201ENST00000516886 89 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC022616.6-201ENST00000520479 119 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AP002748.2-201ENST00000528671 348 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC125611.2-201ENST00000551907 647 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AP005205.1-201ENST00000563503 508 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MIR2682-201ENST00000580305 110 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 MIR3146-201ENST00000580367 79 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC073544.2-201ENST00000601155 540 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 U73023.1-201ENST00000603134 700 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC004067.1-201ENST00000608733 700 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AP002826.1-201ENST00000608835 315 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 uc_338.12-201ENST00000616344 181 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 ATP5A1P2-202ENST00000616464 443 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 AC099654.13-201ENST00000639774 207 ntBASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC3Q9BQI4 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MAPK10-362ENST00000641864 4484 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 RIOK3P1-201ENST00000418778 1528 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC009487.2-201ENST00000420969 6821 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 SNORA80A-201ENST00000363922 136 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 Y_RNA.500-201ENST00000384466 111 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 Y_RNA.510-201ENST00000384511 114 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 HMGN1P14-201ENST00000412459 517 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 NDUFB4P7-201ENST00000423198 363 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 TIMM9P1-201ENST00000436122 256 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MTND4P32-201ENST00000437189 1237 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 RPL17P49-201ENST00000443728 411 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL033528.1-201ENST00000453780 140 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MTND1P12-201ENST00000455231 147 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 HMGN1P18-201ENST00000457642 277 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 snoU109.1-201ENST00000459339 135 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MTCO2P29-201ENST00000465212 189 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC021205.2-201ENST00000480069 347 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 RPS4XP22-201ENST00000480755 780 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 LARP1BP2-201ENST00000486594 519 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC097462.2-201ENST00000504623 481 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AL359273.1-201ENST00000510918 627 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AF131216.2-201ENST00000512316 564 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 MTND5P13-201ENST00000513046 1079 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 AC008885.1-201ENST00000514930 301 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 RNU6-798P-201ENST00000516912 103 ntBASIC3.09□□□□□ -1.91
CCDC3Q9BQI4 DEFB108A-201ENST00000530110 222 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms