Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
NPAS1Q99742 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 RNU6-1287P-201ENST00000362914 107 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 Y_RNA.295-201ENST00000364918 102 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RNU6-1060P-201ENST00000384664 107 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RNU6-606P-201ENST00000384721 111 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RNU6-328P-201ENST00000390887 106 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 MIR1251-201ENST00000408552 70 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RN7SKP263-201ENST00000411194 309 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RNA5SP111-201ENST00000411386 101 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AL513331.1-201ENST00000411908 397 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AL451054.2-201ENST00000420896 202 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 HMGB1P12-201ENST00000438594 598 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NPAS1Q99742 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.54□□□□□ -1.84
NPAS1Q99742 HMGB3P8-201ENST00000449709 577 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 FDX1P2-201ENST00000450769 375 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AC003071.1-201ENST00000451219 789 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 RPL23AP62-201ENST00000463396 453 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 MTCO3P38-201ENST00000468910 766 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RPS23P3-201ENST00000470993 430 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 RNU6-677P-201ENST00000516914 101 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RN7SKP60-201ENST00000516985 239 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RN7SKP258-201ENST00000517151 304 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 IGKV2-23-201ENST00000518729 323 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 RANP9-201ENST00000519957 271 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AC234778.2-201ENST00000566241 354 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 SNORA59B-202ENST00000578183 701 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AC053481.4-201ENST00000583164 216 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AL670379.4-201ENST00000605279 254 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AL591424.2-201ENST00000617023 128 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.54□□□□□ -1.84
NPAS1Q99742 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.54□□□□□ -1.84
NPAS1Q99742 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
NPAS1Q99742 MTND5P17-201ENST00000418405 1603 ntBASIC3.54□□□□□ -1.84
NPAS1Q99742 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NPAS1Q99742 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
NPAS1Q99742 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.54□□□□□ -1.84
NPAS1Q99742 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
NPAS1Q99742 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NPAS1Q99742 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
NPAS1Q99742 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AC008568.2-201ENST00000623862 2313 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NPAS1Q99742 NACAP2-201ENST00000318548 624 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NPAS1Q99742 RNU1-18P-201ENST00000363062 164 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 Y_RNA.256-201ENST00000364594 104 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RNU6-996P-201ENST00000365438 107 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 SNORA69-201ENST00000383895 132 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RNU6-190P-201ENST00000384154 102 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 MIR493-201ENST00000385254 89 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RNU6-1158P-201ENST00000391167 107 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RN7SKP285-201ENST00000410137 318 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.53□□□□□ -1.84
NPAS1Q99742 USP9YP6-201ENST00000413550 854 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC007919.1-201ENST00000429380 217 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.53□□□□□ -1.84
NPAS1Q99742 HMGB1P37-201ENST00000439613 609 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.53□□□□□ -1.84
NPAS1Q99742 NFU1P2-201ENST00000448700 469 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.53□□□□□ -1.84
NPAS1Q99742 RN7SL271P-201ENST00000487601 295 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AC104806.1-201ENST00000508720 308 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC105417.1-201ENST00000514691 285 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RNA5SP401-201ENST00000515920 127 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 Y_RNA.689-201ENST00000516589 107 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 SCARNA14-201ENST00000516903 136 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 NRON-201ENST00000517270 370 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.53□□□□□ -1.84
NPAS1Q99742 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AC103843.2-201ENST00000530523 682 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.53□□□□□ -1.84
NPAS1Q99742 ADI1P3-201ENST00000549509 470 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 RPS3AP4-201ENST00000555161 764 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 MIR5047-201ENST00000579212 100 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.53□□□□□ -1.84
NPAS1Q99742 AC006504.3-201ENST00000586818 523 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC008752.3-201ENST00000588113 712 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC007619.2-201ENST00000605743 379 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 AC130324.3-201ENST00000614165 542 ntBASIC3.53□□□□□ -1.84
NPAS1Q99742 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.53□□□□□ -1.84
NPAS1Q99742 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms