Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AL691449.1-201ENST00000426570 421 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC006946.1-201ENST00000429106 328 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 ERLEC1P1-201ENST00000433806 578 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 CKS1BP5-201ENST00000434172 273 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 RPS27AP15-201ENST00000447672 466 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 RPL7P15-201ENST00000461190 712 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AL163973.1-201ENST00000484753 577 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC110792.1-201ENST00000491826 472 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 TMEM248P1-201ENST00000510579 951 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHFRQ96EP1 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHFRQ96EP1 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHFRQ96EP1 MIR6075-201ENST00000620782 95 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 CR392039.5-201ENST00000623201 510 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 AC010149.2-201ENST00000637608 315 ntBASIC4.22□□□□□ -1.73
CHFRQ96EP1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CHFRQ96EP1 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CHFRQ96EP1 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CHFRQ96EP1 XPOTP1-201ENST00000443317 2398 ntBASIC4.21□□□□□ -1.73
CHFRQ96EP1 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHFRQ96EP1 AL157777.2-201ENST00000258070 137 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CHFRQ96EP1 Y_RNA.5-201ENST00000362334 102 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 Y_RNA.135-201ENST00000363439 95 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 Y_RNA.176-201ENST00000363815 109 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 SNORA73.2-201ENST00000364946 201 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 RNU6-996P-201ENST00000365438 107 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 Y_RNA.527-201ENST00000384573 102 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 MRPL42P3-201ENST00000401492 326 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 MIR548K-201ENST00000408406 116 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC078974.1-201ENST00000411597 223 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 FAM103A2P-201ENST00000444122 354 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC073415.1-201ENST00000449240 153 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 ABCF2P2-201ENST00000450549 296 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC068781.1-201ENST00000488231 618 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 Y_RNA.682-201ENST00000516457 100 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC104986.1-201ENST00000517978 436 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 RANP9-201ENST00000519957 271 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 RPL7P20-201ENST00000520308 745 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 SUMO2P20-201ENST00000520803 283 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 AP002404.1-201ENST00000532005 451 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC124068.1-201ENST00000563131 678 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC022893.3-201ENST00000607665 437 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 AC091953.2-201ENST00000623979 160 ntBASIC4.21□□□□□ -1.74
CHFRQ96EP1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHFRQ96EP1 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHFRQ96EP1 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.21□□□□□ -1.74
CHFRQ96EP1 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CHFRQ96EP1 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHFRQ96EP1 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 AP004289.2-201ENST00000444413 1457 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHFRQ96EP1 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 Y_RNA.100-201ENST00000363141 102 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6-251P-201ENST00000363235 104 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6-1097P-201ENST00000363586 107 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6-115P-201ENST00000364310 107 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6-1032P-201ENST00000384100 107 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6-606P-201ENST00000384721 111 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 MIR23A-201ENST00000385245 73 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 MIR548F5-201ENST00000408421 86 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 MIR1179-201ENST00000408703 91 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RAC1P3-201ENST00000416129 580 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.2□□□□□ -1.74
CHFRQ96EP1 GPR143P-201ENST00000434155 205 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RPS26P40-201ENST00000435209 294 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 AL138799.3-201ENST00000438968 350 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 AL035666.1-201ENST00000446195 348 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 RPL21P23-201ENST00000446654 460 ntBASIC4.2□□□□□ -1.74
CHFRQ96EP1 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms