Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SDCBPP3-201ENST00000419629 891 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 GTF2IP20-201ENST00000431663 360 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AP000542.1-201ENST00000448473 371 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 WDR78-207ENST00000488333 613 ntTSL 3 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC022447.3-201ENST00000506865 495 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC114786.4-201ENST00000508771 728 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 CDC42P4-201ENST00000510507 563 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 MRPS36P2-201ENST00000512569 299 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC114797.1-201ENST00000514003 728 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 MTATP6P9-201ENST00000515039 680 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 SUB1P1-201ENST00000524415 382 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC079600.2-201ENST00000550076 130 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC103810.1-201ENST00000579873 453 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 HMGN2P15-201ENST00000585707 270 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC078899.3-201ENST00000599065 212 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AL139022.2-201ENST00000606934 443 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AL391834.2-201ENST00000609982 546 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC097478.2-201ENST00000610572 514 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AL109620.1-201ENST00000618738 1197 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC010608.3-201ENST00000625048 527 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 MTND1P37-201ENST00000636562 264 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 AC096644.4-201ENST00000563417 2912 ntBASIC2.92□□□□□ -1.94
HDDC3Q8N4P3 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 SNORA4.1-201ENST00000364263 144 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 RPL21P3-201ENST00000395517 478 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 MIR887-201ENST00000401258 79 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL121890.1-201ENST00000435457 205 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 MTCO1P27-201ENST00000448269 226 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL513124.1-201ENST00000450410 614 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC146507.2-201ENST00000460608 476 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC126389.1-201ENST00000477436 290 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 RPL23AP70-201ENST00000483361 460 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 YWHAEP4-201ENST00000505390 198 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 POU5F1P7-201ENST00000508759 541 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 MTCYBP43-201ENST00000513621 740 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 CYCSP39-201ENST00000565821 309 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AL158042.1-201ENST00000605338 460 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC112220.3-201ENST00000605502 502 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 RNU6-88P-201ENST00000606801 100 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC008498.1-201ENST00000613012 531 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC022306.3-201ENST00000619930 550 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 CCT4P2-201ENST00000233836 1548 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 CR848007.1-201ENST00000442354 1699 ntBASIC2.91□□□□□ -1.94
HDDC3Q8N4P3 AC008264.2-201ENST00000610193 3731 ntBASIC2.9□□□□□ -1.94
HDDC3Q8N4P3 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RNU6-906P-201ENST00000384700 70 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 BX682237.1-201ENST00000415016 335 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC098614.2-201ENST00000426040 255 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 MTCO3P45-201ENST00000443036 613 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RPL7P36-201ENST00000444633 681 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC108938.1-201ENST00000451204 136 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RPL12P25-201ENST00000455592 494 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RPL26P9-201ENST00000457466 433 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RPS15AP34-201ENST00000487776 387 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 RN7SL633P-201ENST00000488974 297 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 UBE2V1P12-201ENST00000503954 474 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC110760.3-202ENST00000515177 371 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AP002770.2-201ENST00000543613 532 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC091544.4-201ENST00000555268 342 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC025281.1-201ENST00000567026 265 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC024153.1-201ENST00000603103 365 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 MTND4LP5-201ENST00000605152 292 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC079395.3-201ENST00000615161 484 ntBASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
HDDC3Q8N4P3 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms