Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 Y_RNA.655-201ENST00000515919 96 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 SNORA31.22-201ENST00000517204 135 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC005951.2-201ENST00000576282 495 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 KLKP1-201ENST00000595979 403 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC008277.2-201ENST00000605196 797 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RNVU1-4-201ENST00000612985 164 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC100793.4-201ENST00000613683 429 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 MIR6130-201ENST00000619419 109 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 SNORA38.1-201ENST00000364172 131 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 SNORA1.3-201ENST00000384676 136 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 SNORA48.5-201ENST00000391143 135 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AL109755.1-201ENST00000401791 649 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RNU6-248P-201ENST00000410720 107 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 ELOCP4-201ENST00000420090 333 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC006989.1-201ENST00000427212 131 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC104651.1-201ENST00000427559 735 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RPL7L1P10-201ENST00000427790 463 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RPL31P35-201ENST00000431058 377 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AL162389.1-201ENST00000449233 177 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RPL31P60-201ENST00000478450 367 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RPL30P14-201ENST00000482744 348 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RAC1P2-201ENST00000511164 579 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RN7SKP18-201ENST00000516005 275 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AP002963.1-201ENST00000530590 184 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC006960.3-201ENST00000561845 705 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC087683.1-201ENST00000591187 441 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 DUXAP4-201ENST00000603046 613 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC103710.1-201ENST00000610003 901 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC104073.3-201ENST00000610942 955 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC091304.9-201ENST00000612091 226 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AP003122.6-201ENST00000623831 495 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 OR4G2P-202ENST00000641004 1759 ntBASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.04□□□□□ -1.92
PDLIM3Q53GG5 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RNU6-623P-201ENST00000363143 105 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 SNORA14A-201ENST00000364773 135 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP126-201ENST00000365092 109 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 Y_RNA.517-201ENST00000384551 106 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RNU6-754P-201ENST00000391166 107 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RPS4XP3-201ENST00000398541 413 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AL136372.1-201ENST00000403060 228 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 TXNP7-201ENST00000406296 293 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 U3.42-201ENST00000408746 214 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP38-201ENST00000410750 119 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC007899.1-201ENST00000412776 775 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AL139247.1-201ENST00000422768 325 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC093106.2-201ENST00000428212 385 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC097713.2-201ENST00000430199 356 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 Z74696.2-201ENST00000436514 498 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 TBCAP1-201ENST00000436520 327 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC104472.2-201ENST00000469035 601 ntBASIC3.03□□□□□ -1.92
PDLIM3Q53GG5 AC010631.1-201ENST00000474150 156 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms