Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SF3A1Q15459 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SF3A1Q15459 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.81□□□□□ -1.64
SF3A1Q15459 MIR1183-201ENST00000408856 89 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 ELOCP19-201ENST00000411919 318 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 HMGB1P31-201ENST00000437242 427 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.81□□□□□ -1.64
SF3A1Q15459 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.81□□□□□ -1.64
SF3A1Q15459 SNRPGP3-201ENST00000469405 227 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 AC025554.1-201ENST00000505641 188 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.81□□□□□ -1.64
SF3A1Q15459 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SF3A1Q15459 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 RNA5SP49-201ENST00000516450 115 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 AL121576.1-201ENST00000556055 276 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 AC010525.2-201ENST00000590920 195 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 AC233309.1-201ENST00000619522 751 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.81□□□□□ -1.64
SF3A1Q15459 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
SF3A1Q15459 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.81□□□□□ -1.64
SF3A1Q15459 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SF3A1Q15459 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SF3A1Q15459 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.81□□□□□ -1.64
SF3A1Q15459 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.81□□□□□ -1.64
SF3A1Q15459 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.81□□□□□ -1.64
SF3A1Q15459 CUL1P1-201ENST00000509510 2425 ntBASIC4.81□□□□□ -1.64
SF3A1Q15459 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 ZNF807-201ENST00000328088 1707 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 OR4G1P-203ENST00000641984 1631 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AL139276.1-201ENST00000311910 1001 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 RNU4-66P-201ENST00000365199 138 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 SNORA37-201ENST00000384504 129 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SF3A1Q15459 RN7SKP53-201ENST00000411337 315 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 AL160275.3-201ENST00000423876 471 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AL353748.1-201ENST00000440753 474 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AC116353.2-201ENST00000505332 712 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AC022690.1-201ENST00000526681 550 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.8□□□□□ -1.64
SF3A1Q15459 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AC106782.4-201ENST00000568264 210 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.8□□□□□ -1.64
SF3A1Q15459 AC015917.1-201ENST00000579654 510 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 RMST_3.1-201ENST00000611651 109 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 AC024614.3-201ENST00000637860 256 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 FAM35BP-202ENST00000497389 3337 ntBASIC4.8□□□□□ -1.64
SF3A1Q15459 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SF3A1Q15459 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SF3A1Q15459 RNU6-193P-201ENST00000410977 107 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AL139413.1-201ENST00000421309 217 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.79□□□□□ -1.64
SF3A1Q15459 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC146944.2-203ENST00000502493 354 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AL592156.1-201ENST00000508758 304 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AC139495.1-202ENST00000513164 354 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AC009570.1-201ENST00000609599 745 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 FAM27D1-201ENST00000612308 341 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AL390240.1-201ENST00000612950 384 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 uc_338.34-201ENST00000617467 174 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AL357559.1-201ENST00000622228 274 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AC027309.3-201ENST00000623419 351 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.79□□□□□ -1.64
SF3A1Q15459 AL049641.1-201ENST00000441055 1948 ntBASIC4.79□□□□□ -1.64
SF3A1Q15459 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SF3A1Q15459 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SF3A1Q15459 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SF3A1Q15459 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.79□□□□□ -1.64
SF3A1Q15459 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SF3A1Q15459 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.78□□□□□ -1.64
SF3A1Q15459 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms