Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
RNF4P78317 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.52□□□□□ -1.69
RNF4P78317 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
RNF4P78317 MAPK10-263ENST00000641052 4307 ntBASIC4.52□□□□□ -1.69
RNF4P78317 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
RNF4P78317 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.51□□□□□ -1.69
RNF4P78317 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
RNF4P78317 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.51□□□□□ -1.69
RNF4P78317 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.51□□□□□ -1.69
RNF4P78317 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 SDAD1P1-202ENST00000524156 2051 ntBASIC4.51□□□□□ -1.69
RNF4P78317 Y_RNA.39-201ENST00000362620 98 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RNU5A-1-201ENST00000362698 116 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RNU6-512P-201ENST00000364438 103 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RNU6-99P-201ENST00000364721 107 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RNU6-790P-201ENST00000384479 105 ntBASIC4.51□□□□□ -1.69
RNF4P78317 SNORA41-201ENST00000384675 132 ntBASIC4.51□□□□□ -1.69
RNF4P78317 MIR937-201ENST00000401271 86 ntBASIC4.51□□□□□ -1.69
RNF4P78317 U3.35-201ENST00000408405 208 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RNU2-23P-201ENST00000410545 195 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AC114755.2-201ENST00000413520 361 ntBASIC4.51□□□□□ -1.69
RNF4P78317 CYCSP33-201ENST00000414485 327 ntBASIC4.51□□□□□ -1.69
RNF4P78317 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.51□□□□□ -1.69
RNF4P78317 AL133396.1-201ENST00000432048 687 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 HSPE1P6-201ENST00000479457 291 ntBASIC4.51□□□□□ -1.69
RNF4P78317 RN7SL283P-201ENST00000489055 303 ntBASIC4.51□□□□□ -1.69
RNF4P78317 MRPS35P2-201ENST00000508242 191 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.51□□□□□ -1.69
RNF4P78317 HSBP1P1-201ENST00000555205 166 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AL049839.1-201ENST00000556151 657 ntBASIC4.51□□□□□ -1.69
RNF4P78317 SNORA74C-1-201ENST00000580726 201 ntBASIC4.51□□□□□ -1.69
RNF4P78317 MIR3667-201ENST00000581025 74 ntBASIC4.51□□□□□ -1.69
RNF4P78317 MIR4737-201ENST00000583979 81 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AL160281.1-201ENST00000605307 311 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AL022401.1-201ENST00000619498 108 ntBASIC4.51□□□□□ -1.69
RNF4P78317 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.51□□□□□ -1.69
RNF4P78317 AC007792.1-201ENST00000623023 402 ntBASIC4.51□□□□□ -1.69
RNF4P78317 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.51□□□□□ -1.69
RNF4P78317 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
RNF4P78317 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.51□□□□□ -1.69
RNF4P78317 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
RNF4P78317 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
RNF4P78317 OR4G2P-202ENST00000641004 1759 ntBASIC4.5□□□□□ -1.69
RNF4P78317 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 AC007390.2-201ENST00000606229 3803 ntBASIC4.5□□□□□ -1.69
RNF4P78317 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
RNF4P78317 Y_RNA.48-201ENST00000362710 103 ntBASIC4.5□□□□□ -1.69
RNF4P78317 Y_RNA.314-201ENST00000365114 102 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RNA5SP87-201ENST00000384155 118 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RNU6-784P-201ENST00000384330 106 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RNA5SP113-201ENST00000410486 84 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC104333.2-201ENST00000422630 192 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.5□□□□□ -1.69
RNF4P78317 BX276092.3-201ENST00000424182 230 ntBASIC4.5□□□□□ -1.69
RNF4P78317 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 AC099799.1-201ENST00000439809 192 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC011816.1-201ENST00000441346 546 ntBASIC4.5□□□□□ -1.69
RNF4P78317 OR1H1P-201ENST00000448731 937 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AL356981.1-201ENST00000454879 684 ntBASIC4.5□□□□□ -1.69
RNF4P78317 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.5□□□□□ -1.69
RNF4P78317 AC008571.1-201ENST00000467232 300 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RPS15AP34-201ENST00000487776 387 ntBASIC4.5□□□□□ -1.69
RNF4P78317 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.5□□□□□ -1.69
RNF4P78317 APOOP4-201ENST00000513530 597 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RNA5SP464-201ENST00000516251 108 ntBASIC4.5□□□□□ -1.69
RNF4P78317 RNU6-794P-201ENST00000517261 64 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.5□□□□□ -1.69
RNF4P78317 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.5□□□□□ -1.69
RNF4P78317 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.5□□□□□ -1.69
RNF4P78317 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.5□□□□□ -1.69
RNF4P78317 SNORD84-203ENST00000584275 78 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC093227.2-201ENST00000589357 285 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.5□□□□□ -1.69
RNF4P78317 AC034102.8-201ENST00000615146 484 ntBASIC4.5□□□□□ -1.69
RNF4P78317 AC100827.5-201ENST00000615883 426 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms