Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.57□□□□□ -2
COL4A4P53420 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 RNU6-1042P-201ENST00000384204 107 ntBASIC2.57□□□□□ -2
COL4A4P53420 MIR142-201ENST00000384835 87 ntBASIC2.57□□□□□ -2
COL4A4P53420 FAT1P1-201ENST00000406588 507 ntBASIC2.57□□□□□ -2
COL4A4P53420 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.57□□□□□ -2
COL4A4P53420 AC104651.1-201ENST00000427559 735 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.57□□□□□ -2
COL4A4P53420 MTND1P30-201ENST00000441241 901 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 EEF1E1P1-201ENST00000446998 430 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL592447.1-201ENST00000447592 540 ntBASIC2.57□□□□□ -2
COL4A4P53420 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.57□□□□□ -2
COL4A4P53420 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC2.57□□□□□ -2
COL4A4P53420 SUMO2P2-201ENST00000456482 255 ntBASIC2.57□□□□□ -2
COL4A4P53420 RPL21P71-201ENST00000465598 459 ntBASIC2.57□□□□□ -2
COL4A4P53420 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
COL4A4P53420 MTND2P33-201ENST00000506452 1031 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC113347.3-201ENST00000509113 148 ntBASIC2.57□□□□□ -2
COL4A4P53420 RNA5SP385-201ENST00000515947 110 ntBASIC2.57□□□□□ -2
COL4A4P53420 SNORA70.14-201ENST00000516205 110 ntBASIC2.57□□□□□ -2
COL4A4P53420 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC2.57□□□□□ -2
COL4A4P53420 AC021269.2-201ENST00000532318 330 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC010198.2-201ENST00000550612 259 ntBASIC2.57□□□□□ -2
COL4A4P53420 AC011611.5-201ENST00000552477 578 ntBASIC2.57□□□□□ -2
COL4A4P53420 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC2.57□□□□□ -2
COL4A4P53420 AC012435.1-202ENST00000568772 240 ntBASIC2.57□□□□□ -2
COL4A4P53420 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.57□□□□□ -2
COL4A4P53420 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.57□□□□□ -2
COL4A4P53420 RN7SL622P-201ENST00000585292 275 ntBASIC2.57□□□□□ -2
COL4A4P53420 BNIP3P26-201ENST00000600827 554 ntBASIC2.57□□□□□ -2
COL4A4P53420 AP000907.4-201ENST00000604143 237 ntBASIC2.57□□□□□ -2
COL4A4P53420 SUMO2P14-201ENST00000604488 293 ntBASIC2.57□□□□□ -2
COL4A4P53420 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC2.57□□□□□ -2
COL4A4P53420 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A4P53420 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC2.56□□□□□ -2
COL4A4P53420 AP000776.1-201ENST00000530032 1663 ntBASIC2.56□□□□□ -2
COL4A4P53420 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC2.56□□□□□ -2
COL4A4P53420 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.56□□□□□ -2
COL4A4P53420 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A4P53420 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A4P53420 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.56□□□□□ -2
COL4A4P53420 Y_RNA.192-201ENST00000363977 102 ntBASIC2.56□□□□□ -2
COL4A4P53420 AC019155.1-201ENST00000382242 574 ntBASIC2.56□□□□□ -2
COL4A4P53420 SNORD65C-201ENST00000390962 71 ntBASIC2.56□□□□□ -2
COL4A4P53420 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A4P53420 HMGN1P14-201ENST00000412459 517 ntBASIC2.56□□□□□ -2
COL4A4P53420 PAICSP7-201ENST00000419829 962 ntBASIC2.56□□□□□ -2
COL4A4P53420 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC2.56□□□□□ -2
COL4A4P53420 AC093155.1-201ENST00000440164 826 ntBASIC2.56□□□□□ -2
COL4A4P53420 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.56□□□□□ -2
COL4A4P53420 MTND3P10-201ENST00000450967 341 ntBASIC2.56□□□□□ -2
COL4A4P53420 AC092001.1-201ENST00000453012 261 ntBASIC2.56□□□□□ -2
COL4A4P53420 RNU7-157P-201ENST00000459600 66 ntBASIC2.56□□□□□ -2
COL4A4P53420 AC138853.1-201ENST00000503549 823 ntBASIC2.56□□□□□ -2
COL4A4P53420 PRDX4P1-201ENST00000507189 574 ntBASIC2.56□□□□□ -2
COL4A4P53420 MTATP6P22-201ENST00000507369 598 ntBASIC2.56□□□□□ -2
COL4A4P53420 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.56□□□□□ -2
COL4A4P53420 AC046134.1-201ENST00000514454 666 ntBASIC2.56□□□□□ -2
COL4A4P53420 SCARNA17.1-201ENST00000516211 143 ntBASIC2.56□□□□□ -2
COL4A4P53420 SCARNA17.2-201ENST00000516334 143 ntBASIC2.56□□□□□ -2
COL4A4P53420 RNA5SP281-201ENST00000516504 135 ntBASIC2.56□□□□□ -2
COL4A4P53420 HMGB1P41-201ENST00000520234 440 ntBASIC2.56□□□□□ -2
COL4A4P53420 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.56□□□□□ -2
COL4A4P53420 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.56□□□□□ -2
COL4A4P53420 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.56□□□□□ -2
COL4A4P53420 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.56□□□□□ -2
COL4A4P53420 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.56□□□□□ -2
COL4A4P53420 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.56□□□□□ -2
COL4A4P53420 AC083899.3-201ENST00000603413 594 ntBASIC2.56□□□□□ -2
COL4A4P53420 SCARNA17.4-201ENST00000614296 143 ntBASIC2.56□□□□□ -2
COL4A4P53420 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.56□□□□□ -2
COL4A4P53420 AC099654.12-201ENST00000639868 649 ntBASIC2.56□□□□□ -2
COL4A4P53420 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL4A4P53420 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
COL4A4P53420 MTND5P6-201ENST00000422338 1798 ntBASIC2.55□□□□□ -2
COL4A4P53420 RNU6-259P-201ENST00000383999 107 ntBASIC2.55□□□□□ -2
COL4A4P53420 MIR518E-201ENST00000385252 88 ntBASIC2.55□□□□□ -2
COL4A4P53420 EIF5P1-201ENST00000400019 1231 ntBASIC2.55□□□□□ -2
COL4A4P53420 AL139098.1-201ENST00000407291 389 ntBASIC2.55□□□□□ -2
COL4A4P53420 RN7SKP142-201ENST00000411236 328 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.55□□□□□ -2
COL4A4P53420 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 SAR1AP4-201ENST00000429225 591 ntBASIC2.55□□□□□ -2
COL4A4P53420 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.55□□□□□ -2
COL4A4P53420 ATP5F1P1-201ENST00000433775 569 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC241584.1-201ENST00000438469 1241 ntBASIC2.55□□□□□ -2
COL4A4P53420 MTND3P1-201ENST00000441336 220 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC004865.1-201ENST00000442276 1003 ntBASIC2.55□□□□□ -2
COL4A4P53420 SNRPEP8-201ENST00000442866 260 ntBASIC2.55□□□□□ -2
COL4A4P53420 SEPT14P24-201ENST00000447236 180 ntBASIC2.55□□□□□ -2
COL4A4P53420 ZNF114P1-201ENST00000453500 292 ntBASIC2.55□□□□□ -2
COL4A4P53420 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.55□□□□□ -2
COL4A4P53420 snoU13.18-201ENST00000459483 104 ntBASIC2.55□□□□□ -2
COL4A4P53420 ARL2BPP4-201ENST00000506854 471 ntBASIC2.55□□□□□ -2
COL4A4P53420 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.55□□□□□ -2
COL4A4P53420 AC074344.1-201ENST00000512823 224 ntBASIC2.55□□□□□ -2
COL4A4P53420 AC008837.2-201ENST00000513076 418 ntBASIC2.55□□□□□ -2
COL4A4P53420 RNU6-1053P-201ENST00000515930 101 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms