Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL21P16-201ENST00000495531 483 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AC096751.1-202ENST00000502691 1067 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH6P52701 RNU6-27P-201ENST00000516146 107 ntBASIC2.81□□□□□ -1.96
MSH6P52701 RNA5SP468-201ENST00000516782 93 ntBASIC2.81□□□□□ -1.96
MSH6P52701 RNU6-1261P-201ENST00000517194 104 ntBASIC2.81□□□□□ -1.96
MSH6P52701 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.81□□□□□ -1.96
MSH6P52701 OR4P1P-201ENST00000530808 1136 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AC087241.2-201ENST00000535801 324 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH6P52701 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
MSH6P52701 MTCO3P24-201ENST00000572729 782 ntBASIC2.81□□□□□ -1.96
MSH6P52701 LARP7P2-201ENST00000575306 125 ntBASIC2.81□□□□□ -1.96
MSH6P52701 MIR5708-201ENST00000579723 85 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.81□□□□□ -1.96
MSH6P52701 AC020895.1-201ENST00000595362 272 ntBASIC2.81□□□□□ -1.96
MSH6P52701 AC012669.1-201ENST00000603209 283 ntBASIC2.81□□□□□ -1.96
MSH6P52701 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.81□□□□□ -1.96
MSH6P52701 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
MSH6P52701 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
MSH6P52701 MIR506-201ENST00000384998 124 ntBASIC2.8□□□□□ -1.96
MSH6P52701 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC2.8□□□□□ -1.96
MSH6P52701 RNU4-62P-201ENST00000410125 130 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AC092447.6-201ENST00000414578 210 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AC005005.2-201ENST00000420779 380 ntBASIC2.8□□□□□ -1.96
MSH6P52701 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.8□□□□□ -1.96
MSH6P52701 MTCO1P3-201ENST00000429327 192 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AC012497.1-201ENST00000429392 575 ntBASIC2.8□□□□□ -1.96
MSH6P52701 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.8□□□□□ -1.96
MSH6P52701 RNU6-711P-201ENST00000517255 106 ntBASIC2.8□□□□□ -1.96
MSH6P52701 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
MSH6P52701 AC008127.2-201ENST00000549925 1075 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH6P52701 AMZ2P1-203ENST00000565833 850 ntBASIC2.8□□□□□ -1.96
MSH6P52701 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH6P52701 AC073387.2-201ENST00000604797 784 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AC055876.5-201ENST00000605667 259 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AL355810.1-201ENST00000614629 552 ntBASIC2.8□□□□□ -1.96
MSH6P52701 AC244517.12-201ENST00000623581 663 ntBASIC2.8□□□□□ -1.96
MSH6P52701 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.8□□□□□ -1.96
MSH6P52701 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.8□□□□□ -1.96
MSH6P52701 MKKS-204ENST00000639674 192 ntBASIC2.8□□□□□ -1.96
MSH6P52701 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
MSH6P52701 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
MSH6P52701 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
MSH6P52701 RNU6-1000P-201ENST00000391066 106 ntBASIC2.79□□□□□ -1.96
MSH6P52701 RPS15AP12-201ENST00000419498 388 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH6P52701 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.79□□□□□ -1.96
MSH6P52701 MTND2P19-201ENST00000449129 1012 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.79□□□□□ -1.96
MSH6P52701 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
MSH6P52701 AC112206.4-201ENST00000515142 405 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC2.79□□□□□ -1.96
MSH6P52701 SUB1P3-201ENST00000564581 315 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AC010546.1-201ENST00000569391 485 ntBASIC2.79□□□□□ -1.96
MSH6P52701 MIR3912-201ENST00000577566 105 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AL606834.3-201ENST00000602615 496 ntBASIC2.79□□□□□ -1.96
MSH6P52701 BNIP3P31-201ENST00000604515 566 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AC024060.1-201ENST00000607052 494 ntBASIC2.79□□□□□ -1.96
MSH6P52701 AC013562.2-201ENST00000611632 603 ntBASIC2.79□□□□□ -1.96
MSH6P52701 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
MSH6P52701 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
MSH6P52701 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
MSH6P52701 RNU6-50P-201ENST00000362356 103 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH6P52701 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH6P52701 MTND4LP10-201ENST00000435146 291 ntBASIC2.78□□□□□ -1.96
MSH6P52701 VN1R10P-201ENST00000447106 875 ntBASIC2.78□□□□□ -1.96
MSH6P52701 USP9YP34-201ENST00000453983 808 ntBASIC2.78□□□□□ -1.96
MSH6P52701 PNPLA4P1-201ENST00000458328 305 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC092757.1-201ENST00000467293 467 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC010460.2-201ENST00000509054 677 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC093752.1-206ENST00000511823 336 ntBASIC2.78□□□□□ -1.96
MSH6P52701 SNORA31.8-201ENST00000516327 108 ntBASIC2.78□□□□□ -1.96
MSH6P52701 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.78□□□□□ -1.96
MSH6P52701 AP001189.2-201ENST00000527320 189 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.78□□□□□ -1.96
MSH6P52701 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.78□□□□□ -1.96
MSH6P52701 AC138915.2-201ENST00000569776 97 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH6P52701 DUXAP3-201ENST00000603616 594 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AL035411.2-201ENST00000604022 421 ntBASIC2.78□□□□□ -1.96
MSH6P52701 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.78□□□□□ -1.96
MSH6P52701 AC009237.15-201ENST00000610252 501 ntBASIC2.78□□□□□ -1.96
MSH6P52701 VIS1.1-201ENST00000610517 203 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC010678.1-201ENST00000614118 713 ntBASIC2.78□□□□□ -1.96
MSH6P52701 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AL360181.4-201ENST00000621752 134 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC090617.7-201ENST00000623952 126 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AC090897.3-201ENST00000636973 1157 ntBASIC2.78□□□□□ -1.96
MSH6P52701 AL109809.4-201ENST00000603520 2185 ntBASIC2.78□□□□□ -1.96
MSH6P52701 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
MSH6P52701 RNU6-216P-201ENST00000363282 104 ntBASIC2.77□□□□□ -1.97
MSH6P52701 SNORD51-201ENST00000384320 80 ntBASIC2.77□□□□□ -1.97
MSH6P52701 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
MSH6P52701 RNU4-65P-201ENST00000410473 140 ntBASIC2.77□□□□□ -1.97
MSH6P52701 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.77□□□□□ -1.97
MSH6P52701 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.77□□□□□ -1.97
MSH6P52701 RPL7P30-201ENST00000420888 709 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms