Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC1.86□□□□□ -2.11
CUX1P39880 OR6C73P-201ENST00000546432 358 ntBASIC1.86□□□□□ -2.11
CUX1P39880 SUB1P4-201ENST00000566062 339 ntBASIC1.86□□□□□ -2.11
CUX1P39880 UBE2L4-201ENST00000587688 464 ntBASIC1.86□□□□□ -2.11
CUX1P39880 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC1.86□□□□□ -2.11
CUX1P39880 MFSD8-213ENST00000641134 1327 ntBASIC1.85□□□□□ -2.11
CUX1P39880 AC016769.3-201ENST00000396562 315 ntBASIC1.85□□□□□ -2.11
CUX1P39880 RNU6-1077P-201ENST00000410506 102 ntBASIC1.85□□□□□ -2.11
CUX1P39880 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.85□□□□□ -2.11
CUX1P39880 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CUX1P39880 RNU6-405P-201ENST00000516637 110 ntBASIC1.85□□□□□ -2.11
CUX1P39880 RNU6-467P-201ENST00000517027 110 ntBASIC1.85□□□□□ -2.11
CUX1P39880 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CUX1P39880 AC008083.4-201ENST00000615076 444 ntBASIC1.85□□□□□ -2.11
CUX1P39880 RNU6-799P-201ENST00000363567 107 ntBASIC1.84□□□□□ -2.11
CUX1P39880 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC1.84□□□□□ -2.11
CUX1P39880 AL445305.1-201ENST00000432577 575 ntBASIC1.84□□□□□ -2.11
CUX1P39880 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC1.84□□□□□ -2.11
CUX1P39880 NCOR1P1-202ENST00000486162 291 ntBASIC1.84□□□□□ -2.11
CUX1P39880 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.84□□□□□ -2.11
CUX1P39880 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.84□□□□□ -2.11
CUX1P39880 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC1.84□□□□□ -2.11
CUX1P39880 AC123912.5-201ENST00000605470 343 ntBASIC1.84□□□□□ -2.11
CUX1P39880 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC1.84□□□□□ -2.11
CUX1P39880 AC111188.2-201ENST00000529697 1387 ntBASIC1.84□□□□□ -2.12
CUX1P39880 SGO1P2-201ENST00000429458 1589 ntBASIC1.83□□□□□ -2.12
CUX1P39880 RNA5SP139-201ENST00000364340 117 ntBASIC1.83□□□□□ -2.12
CUX1P39880 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.83□□□□□ -2.12
CUX1P39880 TRGV6-201ENST00000417928 299 ntBASIC1.83□□□□□ -2.12
CUX1P39880 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.83□□□□□ -2.12
CUX1P39880 AC114801.2-201ENST00000503825 781 ntBASIC1.83□□□□□ -2.12
CUX1P39880 LIAS-206ENST00000513731 826 ntTSL 5 BASIC1.83□□□□□ -2.12
CUX1P39880 RNU2-44P-201ENST00000516795 194 ntBASIC1.83□□□□□ -2.12
CUX1P39880 MTCO1P47-201ENST00000523889 1271 ntBASIC1.83□□□□□ -2.12
CUX1P39880 MIR7974-201ENST00000615835 79 ntBASIC1.83□□□□□ -2.12
CUX1P39880 AL445493.3-201ENST00000619568 477 ntBASIC1.83□□□□□ -2.12
CUX1P39880 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CUX1P39880 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
CUX1P39880 SNORA14A-201ENST00000364773 135 ntBASIC1.82□□□□□ -2.12
CUX1P39880 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC1.82□□□□□ -2.12
CUX1P39880 MIR216A-201ENST00000385063 110 ntBASIC1.82□□□□□ -2.12
CUX1P39880 MIR524-201ENST00000385242 87 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.82□□□□□ -2.12
CUX1P39880 RPS20P15-201ENST00000412792 311 ntBASIC1.82□□□□□ -2.12
CUX1P39880 HMGN2P30-201ENST00000423237 256 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AL591704.1-201ENST00000432574 275 ntBASIC1.82□□□□□ -2.12
CUX1P39880 IPO7P1-201ENST00000442031 636 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AC234775.1-201ENST00000454247 670 ntBASIC1.82□□□□□ -2.12
CUX1P39880 Y_RNA.681-201ENST00000516445 113 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AC023825.1-201ENST00000566704 1030 ntBASIC1.82□□□□□ -2.12
CUX1P39880 VN1R107P-201ENST00000601784 209 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AC106028.5-201ENST00000610332 395 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AC243773.3-201ENST00000613270 256 ntBASIC1.82□□□□□ -2.12
CUX1P39880 AL449363.1-201ENST00000617815 186 ntBASIC1.82□□□□□ -2.12
CUX1P39880 HMGB1P5-201ENST00000255320 642 ntBASIC1.81□□□□□ -2.12
CUX1P39880 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
CUX1P39880 AL445687.1-201ENST00000439946 251 ntBASIC1.81□□□□□ -2.12
CUX1P39880 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.81□□□□□ -2.12
CUX1P39880 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC1.81□□□□□ -2.12
CUX1P39880 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CUX1P39880 AC097655.1-201ENST00000635075 318 ntBASIC1.81□□□□□ -2.12
CUX1P39880 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC1.81□□□□□ -2.12
CUX1P39880 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.81□□□□□ -2.12
CUX1P39880 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC1.81□□□□□ -2.12
CUX1P39880 HNRNPDLP3-201ENST00000456745 380 ntBASIC1.81□□□□□ -2.12
CUX1P39880 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.81□□□□□ -2.12
CUX1P39880 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.81□□□□□ -2.12
CUX1P39880 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC1.81□□□□□ -2.12
CUX1P39880 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.8□□□□□ -2.12
CUX1P39880 SNORA7.2-201ENST00000364446 145 ntBASIC1.8□□□□□ -2.12
CUX1P39880 MIR627-201ENST00000384979 97 ntBASIC1.8□□□□□ -2.12
CUX1P39880 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.8□□□□□ -2.12
CUX1P39880 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
CUX1P39880 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.8□□□□□ -2.12
CUX1P39880 ATG12P2-201ENST00000456830 416 ntBASIC1.8□□□□□ -2.12
CUX1P39880 RPS29P23-201ENST00000458635 123 ntBASIC1.8□□□□□ -2.12
CUX1P39880 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC1.8□□□□□ -2.12
CUX1P39880 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.8□□□□□ -2.12
CUX1P39880 AL138976.2-201ENST00000563989 694 ntBASIC1.8□□□□□ -2.12
CUX1P39880 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.8□□□□□ -2.12
CUX1P39880 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.8□□□□□ -2.12
CUX1P39880 AP003072.4-201ENST00000624580 310 ntBASIC1.8□□□□□ -2.12
CUX1P39880 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
CUX1P39880 MTND4P27-201ENST00000450813 1354 ntBASIC1.79□□□□□ -2.12
CUX1P39880 RNU4-38P-201ENST00000364472 129 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.79□□□□□ -2.12
CUX1P39880 EBAG9P1-201ENST00000418955 543 ntBASIC1.79□□□□□ -2.12
CUX1P39880 PGBD4P6-201ENST00000421501 610 ntBASIC1.79□□□□□ -2.12
CUX1P39880 THAP5P1-201ENST00000439089 262 ntBASIC1.79□□□□□ -2.12
CUX1P39880 RPS27P21-201ENST00000486977 252 ntBASIC1.79□□□□□ -2.12
CUX1P39880 RNA5SP471-201ENST00000516971 106 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AP005597.4-201ENST00000526762 229 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.79□□□□□ -2.12
CUX1P39880 AC009220.3-201ENST00000604318 586 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AC096772.1-201ENST00000609146 564 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AL031601.2-202ENST00000622650 282 ntBASIC1.79□□□□□ -2.12
CUX1P39880 CUL4AP1-201ENST00000514750 1863 ntBASIC1.79□□□□□ -2.12
CUX1P39880 AC073055.1-201ENST00000456901 1621 ntBASIC1.78□□□□□ -2.12
CUX1P39880 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms