Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.13□□□□□ -1.75
MSX2P35548 AC079140.5-201ENST00000507882 310 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RNU6-976P-201ENST00000516086 111 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RNU6-1213P-201ENST00000517075 94 ntBASIC4.13□□□□□ -1.75
MSX2P35548 RNU6-685P-201ENST00000517088 95 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.13□□□□□ -1.75
MSX2P35548 AP001922.4-201ENST00000526967 290 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AL121576.1-201ENST00000556055 276 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.13□□□□□ -1.75
MSX2P35548 MIR3668-201ENST00000582138 75 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.13□□□□□ -1.75
MSX2P35548 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.13□□□□□ -1.75
MSX2P35548 AC064801.1-201ENST00000612025 407 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AC012409.4-201ENST00000612923 249 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AL157817.1-201ENST00000614264 790 ntBASIC4.13□□□□□ -1.75
MSX2P35548 AL138726.1-201ENST00000614873 333 ntBASIC4.13□□□□□ -1.75
MSX2P35548 U73479.1-201ENST00000618062 168 ntBASIC4.13□□□□□ -1.75
MSX2P35548 MIR6853-201ENST00000619642 74 ntBASIC4.13□□□□□ -1.75
MSX2P35548 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.13□□□□□ -1.75
MSX2P35548 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSX2P35548 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
MSX2P35548 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
MSX2P35548 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX2P35548 AC066616.2-201ENST00000559334 1481 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX2P35548 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSX2P35548 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 RNA5SP502-201ENST00000362694 119 ntBASIC4.12□□□□□ -1.75
MSX2P35548 Y_RNA.401-201ENST00000383965 117 ntBASIC4.12□□□□□ -1.75
MSX2P35548 Y_RNA.452-201ENST00000384202 108 ntBASIC4.12□□□□□ -1.75
MSX2P35548 Y_RNA.493-201ENST00000384422 102 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RNU6-601P-201ENST00000384540 107 ntBASIC4.12□□□□□ -1.75
MSX2P35548 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 RNU6-985P-201ENST00000410182 104 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RN7SKP159-201ENST00000410657 292 ntBASIC4.12□□□□□ -1.75
MSX2P35548 Y_RNA.646-201ENST00000410980 101 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RNU6-387P-201ENST00000411331 105 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC018865.2-201ENST00000423631 129 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC016831.4-201ENST00000438302 307 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC010655.1-201ENST00000449336 292 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX2P35548 SCARNA18-201ENST00000459004 134 ntBASIC4.12□□□□□ -1.75
MSX2P35548 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX2P35548 RPL21P8-201ENST00000465083 535 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RPL35AP15-201ENST00000468042 339 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RN7SL860P-201ENST00000473738 223 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX2P35548 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
MSX2P35548 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX2P35548 AC017037.1-201ENST00000508460 471 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC008526.1-201ENST00000509149 338 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX2P35548 MTCO2P24-201ENST00000515611 426 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.12□□□□□ -1.75
MSX2P35548 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 AC004817.2-201ENST00000561794 651 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC069061.3-201ENST00000582254 823 ntBASIC4.12□□□□□ -1.75
MSX2P35548 MIR3149-201ENST00000584629 83 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AC008521.1-201ENST00000587471 187 ntBASIC4.12□□□□□ -1.75
MSX2P35548 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 7SK.7-201ENST00000603504 247 ntBASIC4.12□□□□□ -1.75
MSX2P35548 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.12□□□□□ -1.75
MSX2P35548 FAM157A-202ENST00000615155 405 ntBASIC4.12□□□□□ -1.75
MSX2P35548 MIR6891-201ENST00000618788 93 ntBASIC4.12□□□□□ -1.75
MSX2P35548 AL669831.3-213ENST00000636676 183 ntBASIC4.12□□□□□ -1.75
MSX2P35548 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSX2P35548 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX2P35548 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX2P35548 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.12□□□□□ -1.75
MSX2P35548 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSX2P35548 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
MSX2P35548 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX2P35548 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
MSX2P35548 AC090337.1-201ENST00000579651 2074 ntBASIC4.11□□□□□ -1.75
MSX2P35548 Y_RNA.158-201ENST00000363651 101 ntBASIC4.11□□□□□ -1.75
MSX2P35548 SNORA71.2-201ENST00000364941 134 ntBASIC4.11□□□□□ -1.75
MSX2P35548 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
MSX2P35548 SNORA56-201ENST00000383966 129 ntBASIC4.11□□□□□ -1.75
MSX2P35548 RNU6-1040P-201ENST00000383974 107 ntBASIC4.11□□□□□ -1.75
MSX2P35548 CISD1P1-201ENST00000393907 327 ntBASIC4.11□□□□□ -1.75
MSX2P35548 RNU2-47P-201ENST00000410649 186 ntBASIC4.11□□□□□ -1.75
MSX2P35548 MCFD2P1-201ENST00000417812 300 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 RPS6P12-201ENST00000432491 726 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 AC007967.1-201ENST00000455422 1159 ntBASIC4.11□□□□□ -1.75
MSX2P35548 snoU13.3-201ENST00000459441 104 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AC116533.1-201ENST00000459748 321 ntBASIC4.11□□□□□ -1.75
MSX2P35548 RPS27AP1-201ENST00000475545 471 ntBASIC4.11□□□□□ -1.75
MSX2P35548 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.11□□□□□ -1.75
MSX2P35548 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.11□□□□□ -1.75
MSX2P35548 RBBP4P6-201ENST00000508098 202 ntBASIC4.11□□□□□ -1.75
MSX2P35548 HIGD1AP13-201ENST00000509878 289 ntBASIC4.11□□□□□ -1.75
MSX2P35548 VWA8P1-201ENST00000510889 176 ntBASIC4.11□□□□□ -1.75
MSX2P35548 AC009902.1-201ENST00000519351 183 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms