Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC083798.1-201ENST00000472671 131 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC106707.2-201ENST00000484182 374 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 RPL23AP55-201ENST00000498163 452 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 HSPD1P15-201ENST00000505573 1122 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC004062.1-201ENST00000509926 645 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 RNU6-835P-201ENST00000516974 104 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 RNU6-410P-201ENST00000517006 107 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 HMGB1P41-201ENST00000520234 440 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC011979.2-201ENST00000527568 352 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC008011.1-201ENST00000545989 227 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC128657.1-201ENST00000549459 145 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 MIR3690-201ENST00000580266 75 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AL121992.2-201ENST00000606262 256 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 AC004696.1-201ENST00000614345 607 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AL450472.3-201ENST00000615578 367 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AC015967.1-201ENST00000619893 476 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
SMARCA1P28370 DUXAP9-208ENST00000622815 614 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 AL732372.2-225ENST00000642124 456 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
SMARCA1P28370 NCAPGP1-201ENST00000505112 1814 ntBASIC4.23□□□□□ -1.73
SMARCA1P28370 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.23□□□□□ -1.73
SMARCA1P28370 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
SMARCA1P28370 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SMARCA1P28370 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 SNORA73.2-201ENST00000364946 201 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SMARCA1P28370 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.22□□□□□ -1.73
SMARCA1P28370 PTMAP5-201ENST00000393073 333 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AL109755.1-201ENST00000401791 649 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 Z98941.1-201ENST00000407764 100 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.22□□□□□ -1.73
SMARCA1P28370 RPL30P16-201ENST00000419341 429 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 SDCBPP3-201ENST00000419629 891 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.22□□□□□ -1.73
SMARCA1P28370 DUTP6-201ENST00000425573 462 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 NDUFB1P1-201ENST00000435191 180 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 BNIP3P2-201ENST00000441221 577 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.22□□□□□ -1.73
SMARCA1P28370 AL121871.1-201ENST00000443413 436 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 SNRPGP6-201ENST00000451124 220 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.22□□□□□ -1.73
SMARCA1P28370 snoU13.4-201ENST00000458916 104 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.22□□□□□ -1.73
SMARCA1P28370 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.22□□□□□ -1.73
SMARCA1P28370 RN7SKP18-201ENST00000516005 275 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC026403.1-201ENST00000518938 295 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC123904.3-201ENST00000547218 814 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.22□□□□□ -1.73
SMARCA1P28370 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.22□□□□□ -1.73
SMARCA1P28370 RPL21P12-201ENST00000559810 515 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 ZNF192P1-203ENST00000565888 810 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 BNIP3P22-201ENST00000593399 556 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AL034351.1-201ENST00000605288 668 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 SNORA51-201ENST00000606420 132 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.22□□□□□ -1.73
SMARCA1P28370 AC006023.2-201ENST00000609916 167 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AL020991.1-201ENST00000612314 373 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 TUG1_2.1-201ENST00000614234 87 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SMARCA1P28370 MIR6130-201ENST00000619419 109 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 AC009093.8-201ENST00000641769 292 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.22□□□□□ -1.73
SMARCA1P28370 AC010733.2-201ENST00000589496 5702 ntBASIC4.22□□□□□ -1.73
SMARCA1P28370 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SMARCA1P28370 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.21□□□□□ -1.74
SMARCA1P28370 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
SMARCA1P28370 Y_RNA.367-201ENST00000365544 101 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RNU1-89P-201ENST00000384592 164 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SMARCA1P28370 RNU4-65P-201ENST00000410473 140 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RNU2-71P-201ENST00000411395 189 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RHEBP3-201ENST00000411920 351 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SMARCA1P28370 MRPL50P2-201ENST00000416821 482 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 OR2AS1P-201ENST00000427827 319 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC4.21□□□□□ -1.74
SMARCA1P28370 GTF2IP20-201ENST00000431663 360 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 MTATP6P16-201ENST00000434543 526 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC090774.1-201ENST00000435925 246 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.21□□□□□ -1.74
SMARCA1P28370 AC022364.2-201ENST00000457963 554 ntBASIC4.21□□□□□ -1.74
SMARCA1P28370 RPL23AP62-201ENST00000463396 453 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms