Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 HMGN1P28-201ENST00000521340 364 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC2.66□□□□□ -1.98
SDC1P18827 DUXAP5-201ENST00000529668 529 ntBASIC2.66□□□□□ -1.98
SDC1P18827 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
SDC1P18827 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.66□□□□□ -1.98
SDC1P18827 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.66□□□□□ -1.98
SDC1P18827 AC124947.2-202ENST00000552735 133 ntBASIC2.66□□□□□ -1.98
SDC1P18827 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC2.66□□□□□ -1.98
SDC1P18827 AC012435.1-202ENST00000568772 240 ntBASIC2.66□□□□□ -1.98
SDC1P18827 ZNF861P-201ENST00000588126 639 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC024153.1-201ENST00000603103 365 ntBASIC2.66□□□□□ -1.98
SDC1P18827 MTCYBP22-201ENST00000603788 447 ntBASIC2.66□□□□□ -1.98
SDC1P18827 MIR8057-201ENST00000620957 69 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC079248.2-201ENST00000623779 326 ntBASIC2.66□□□□□ -1.98
SDC1P18827 AC120349.3-201ENST00000624377 529 ntBASIC2.66□□□□□ -1.98
SDC1P18827 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SDC1P18827 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.66□□□□□ -1.98
SDC1P18827 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.66□□□□□ -1.98
SDC1P18827 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.98
SDC1P18827 AC092435.3-201ENST00000565538 3654 ntBASIC2.65□□□□□ -1.99
SDC1P18827 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
SDC1P18827 RNA5SP252-201ENST00000391131 119 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AL109755.1-201ENST00000401791 649 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 B3GALNT1P1-201ENST00000420569 975 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 AC234781.2-201ENST00000426370 994 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC091390.3-201ENST00000426478 338 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AL356867.1-201ENST00000429623 299 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC104332.2-201ENST00000429959 156 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC109583.1-201ENST00000432156 268 ntBASIC2.65□□□□□ -1.99
SDC1P18827 MTCO3P45-201ENST00000443036 613 ntBASIC2.65□□□□□ -1.99
SDC1P18827 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC009237.8-201ENST00000445492 379 ntBASIC2.65□□□□□ -1.99
SDC1P18827 MRPL50P4-201ENST00000446432 475 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC140076.1-201ENST00000449897 361 ntBASIC2.65□□□□□ -1.99
SDC1P18827 MTND2P24-201ENST00000453434 806 ntBASIC2.65□□□□□ -1.99
SDC1P18827 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.65□□□□□ -1.99
SDC1P18827 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.65□□□□□ -1.99
SDC1P18827 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
SDC1P18827 AL135752.1-201ENST00000479477 471 ntBASIC2.65□□□□□ -1.99
SDC1P18827 RPL9P33-201ENST00000484311 566 ntBASIC2.65□□□□□ -1.99
SDC1P18827 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
SDC1P18827 ARL4AP2-201ENST00000507378 601 ntBASIC2.65□□□□□ -1.99
SDC1P18827 RNU6-759P-201ENST00000516740 103 ntBASIC2.65□□□□□ -1.99
SDC1P18827 RNU6-232P-201ENST00000517144 64 ntBASIC2.65□□□□□ -1.99
SDC1P18827 NRON-201ENST00000517270 370 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AP000907.2-201ENST00000530827 353 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 AL355836.1-201ENST00000555951 870 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.65□□□□□ -1.99
SDC1P18827 MTCO3P24-201ENST00000572729 782 ntBASIC2.65□□□□□ -1.99
SDC1P18827 MTCO3P13-201ENST00000577757 781 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.65□□□□□ -1.99
SDC1P18827 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SDC1P18827 AC023043.3-201ENST00000593113 385 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC007038.2-201ENST00000608095 740 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC004908.2-201ENST00000609090 574 ntBASIC2.65□□□□□ -1.99
SDC1P18827 AC091304.6-201ENST00000619761 202 ntBASIC2.65□□□□□ -1.99
SDC1P18827 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
SDC1P18827 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.65□□□□□ -1.99
SDC1P18827 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.64□□□□□ -1.99
SDC1P18827 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SDC1P18827 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
SDC1P18827 Y_RNA.46-201ENST00000362695 102 ntBASIC2.64□□□□□ -1.99
SDC1P18827 RNU6-223P-201ENST00000362830 107 ntBASIC2.64□□□□□ -1.99
SDC1P18827 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.64□□□□□ -1.99
SDC1P18827 MIR325-201ENST00000385260 98 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL512633.1-201ENST00000399931 655 ntBASIC2.64□□□□□ -1.99
SDC1P18827 RNU4-72P-201ENST00000410754 173 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.64□□□□□ -1.99
SDC1P18827 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.64□□□□□ -1.99
SDC1P18827 AL365184.2-201ENST00000431139 435 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL139132.1-201ENST00000431587 344 ntBASIC2.64□□□□□ -1.99
SDC1P18827 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 RPL37P21-201ENST00000435890 276 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 AL049734.2-201ENST00000441066 616 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 AL133217.1-201ENST00000450980 425 ntBASIC2.64□□□□□ -1.99
SDC1P18827 GSTA11P-201ENST00000452866 669 ntBASIC2.64□□□□□ -1.99
SDC1P18827 ZNF114P1-201ENST00000453500 292 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AC008481.1-201ENST00000463278 396 ntBASIC2.64□□□□□ -1.99
SDC1P18827 LARP1BP2-201ENST00000486594 519 ntBASIC2.64□□□□□ -1.99
SDC1P18827 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SDC1P18827 AC117522.3-201ENST00000507974 584 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AC116347.2-201ENST00000514912 523 ntBASIC2.64□□□□□ -1.99
SDC1P18827 RNA5SP341-201ENST00000516261 117 ntBASIC2.64□□□□□ -1.99
SDC1P18827 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.64□□□□□ -1.99
SDC1P18827 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms