Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.23□□□□□ -1.73
HLA-DOAP06340 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.23□□□□□ -1.73
HLA-DOAP06340 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.23□□□□□ -1.73
HLA-DOAP06340 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.23□□□□□ -1.73
HLA-DOAP06340 AC067852.4-201ENST00000590314 478 ntBASIC4.23□□□□□ -1.73
HLA-DOAP06340 AC008638.3-201ENST00000603341 463 ntBASIC4.23□□□□□ -1.73
HLA-DOAP06340 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DOAP06340 AL450326.2-201ENST00000421913 1962 ntBASIC4.23□□□□□ -1.73
HLA-DOAP06340 AC073346.2-201ENST00000624724 2058 ntBASIC4.23□□□□□ -1.73
HLA-DOAP06340 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HLA-DOAP06340 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DOAP06340 OR4G1P-203ENST00000641984 1631 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DOAP06340 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 Y_RNA.22-201ENST00000362492 102 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 RNU6-989P-201ENST00000362756 107 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 RNU4-44P-201ENST00000363050 141 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 Y_RNA.138-201ENST00000363462 102 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 Y_RNA.367-201ENST00000365544 101 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 NDUFB4P5-201ENST00000415445 361 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 DBIP2-201ENST00000419076 262 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC008065.1-201ENST00000428525 348 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 OR4K11P-201ENST00000431829 904 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AL356535.1-201ENST00000440335 398 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 RPL21P10-201ENST00000463521 490 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 HSPD1P15-201ENST00000505573 1122 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC114797.1-201ENST00000514003 728 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 OR4K8P-201ENST00000578842 1048 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC010928.3-201ENST00000587712 541 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC021646.1-201ENST00000605469 484 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 OR6R2P-201ENST00000609216 300 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC103710.2-201ENST00000609912 942 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 U4.6-201ENST00000621618 127 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 MIR1302-1-201ENST00000637932 143 ntBASIC4.22□□□□□ -1.73
HLA-DOAP06340 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DOAP06340 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HLA-DOAP06340 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.22□□□□□ -1.73
HLA-DOAP06340 ASNSP3-201ENST00000451989 1306 ntBASIC4.21□□□□□ -1.73
HLA-DOAP06340 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
HLA-DOAP06340 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.73
HLA-DOAP06340 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
HLA-DOAP06340 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.21□□□□□ -1.73
HLA-DOAP06340 ZNF734P-201ENST00000419494 1534 ntBASIC4.21□□□□□ -1.73
HLA-DOAP06340 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
HLA-DOAP06340 AC011460.1-201ENST00000636268 1834 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HLA-DOAP06340 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HLA-DOAP06340 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HLA-DOAP06340 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 RNU6-1097P-201ENST00000363586 107 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 Y_RNA.166-201ENST00000363730 102 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 RNU6-263P-201ENST00000363811 107 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 Y_RNA.255-201ENST00000364581 97 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 RNA5SP267-201ENST00000364893 126 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 RNU4-20P-201ENST00000365601 151 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 Y_RNA.493-201ENST00000384422 102 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 MIR19A-201ENST00000384878 82 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 MT-TC-201ENST00000387405 66 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 SNORA68.2-201ENST00000391263 128 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 HSPE1P8-201ENST00000406997 288 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 RNU2-47P-201ENST00000410649 186 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 PSMA2P3-201ENST00000429685 675 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 UBE2V1P13-201ENST00000436983 439 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC108734.1-201ENST00000439549 399 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC073415.1-201ENST00000449240 153 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC025518.1-201ENST00000479856 347 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 RN7SKP82-201ENST00000516786 223 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC022790.1-201ENST00000522872 204 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC022690.1-201ENST00000526681 550 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AP003072.1-201ENST00000531740 145 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC022882.1-201ENST00000532142 501 ntBASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.21□□□□□ -1.74
HLA-DOAP06340 AC128657.1-201ENST00000549459 145 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms