Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC244098.2-201ENST00000422068 99 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AC233728.2-201ENST00000425348 757 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 MTND3P6-201ENST00000485242 339 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 RPS15AP34-201ENST00000487776 387 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AP001804.3-201ENST00000525146 880 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 MIR4295-201ENST00000585286 85 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AC009090.3-201ENST00000616553 565 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AC012640.5-201ENST00000623897 319 ntBASIC1.87□□□□□ -2.11
CCDC88BA6NC98 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.87□□□□□ -2.11
CCDC88BA6NC98 SGO1P2-201ENST00000429458 1589 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AC111188.2-201ENST00000529697 1387 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 OR1L1-202ENST00000373686 1083 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AL138880.1-201ENST00000405824 642 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 RNU4-72P-201ENST00000410754 173 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AL590233.1-201ENST00000430017 456 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AL360221.1-201ENST00000445989 335 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AC123912.5-201ENST00000605470 343 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 AP003072.4-201ENST00000624580 310 ntBASIC1.86□□□□□ -2.11
CCDC88BA6NC98 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC88BA6NC98 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CCDC88BA6NC98 POLR2J4-204ENST00000418424 324 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 TRAPPC2P4-201ENST00000421750 331 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC093767.1-201ENST00000504523 156 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC114322.1-201ENST00000506771 926 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 MIR5000-201ENST00000577717 103 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC090616.5-202ENST00000582111 297 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.85□□□□□ -2.11
CCDC88BA6NC98 VN1R107P-201ENST00000601784 209 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC106791.2-201ENST00000604680 391 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 AC020658.4-201ENST00000613987 684 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 uc_338.9-201ENST00000617424 182 ntBASIC1.85□□□□□ -2.11
CCDC88BA6NC98 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.85□□□□□ -2.11
CCDC88BA6NC98 Y_RNA.374-201ENST00000365606 101 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 RNU6-997P-201ENST00000384725 107 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 RPL31P63-201ENST00000422565 375 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 SDCBPP1-201ENST00000440192 890 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 AL035407.2-201ENST00000454090 378 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 AC108059.3-201ENST00000456388 214 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
CCDC88BA6NC98 SNORA31.16-201ENST00000516773 139 ntBASIC1.84□□□□□ -2.11
CCDC88BA6NC98 AC068700.1-201ENST00000565862 3754 ntBASIC1.84□□□□□ -2.12
CCDC88BA6NC98 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.83□□□□□ -2.12
CCDC88BA6NC98 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
CCDC88BA6NC98 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.83□□□□□ -2.12
CCDC88BA6NC98 KLRA1P-201ENST00000503499 986 ntBASIC1.83□□□□□ -2.12
CCDC88BA6NC98 RNU6-1073P-201ENST00000517182 106 ntBASIC1.83□□□□□ -2.12
CCDC88BA6NC98 MIR3973-201ENST00000579824 107 ntBASIC1.83□□□□□ -2.12
CCDC88BA6NC98 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC1.83□□□□□ -2.12
CCDC88BA6NC98 RNU4-38P-201ENST00000364472 129 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 TXNP7-201ENST00000406296 293 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AL591704.2-201ENST00000421658 181 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AL121601.2-201ENST00000438019 707 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 HMGB3P17-201ENST00000504195 649 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC083923.1-201ENST00000523708 376 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 NUTF2P8-201ENST00000604593 363 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 SNORD114-21-201ENST00000606412 72 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AP001350.1-201ENST00000601906 1524 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 RNU1-62P-201ENST00000362599 164 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 SNORA62.1-201ENST00000364287 154 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AL627224.1-201ENST00000448334 444 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC025768.1-201ENST00000510057 267 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AP005597.4-201ENST00000526762 229 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.82□□□□□ -2.12
CCDC88BA6NC98 FAM106CP-201ENST00000582212 507 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 AC245884.12-201ENST00000615364 59 ntBASIC1.82□□□□□ -2.12
CCDC88BA6NC98 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 OR51A5P-201ENST00000415429 942 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 RPL23AP33-201ENST00000442301 452 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.81□□□□□ -2.12
CCDC88BA6NC98 NDUFS5P6-201ENST00000529136 295 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 CYCSP26-201ENST00000534107 320 ntBASIC1.81□□□□□ -2.12
CCDC88BA6NC98 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms