Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL157871.3-201ENST00000557231 293 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC006077.1-201ENST00000604746 343 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AL731566.2-201ENST00000618971 317 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 AC073869.10-201ENST00000642016 354 ntBASIC5.27□□□□□ -1.57
USP3Q9Y6I4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
USP3Q9Y6I4 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.439-201ENST00000384119 94 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 RNU6-48P-201ENST00000384161 107 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 SNORD115-46-201ENST00000390982 71 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AL513331.1-201ENST00000411908 397 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 RANP8-201ENST00000444720 713 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 RN7SKP210-201ENST00000459176 261 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 RPS17P2-201ENST00000461663 408 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AL359219.2-201ENST00000555184 348 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC067852.4-201ENST00000590314 478 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 MIR376A1-201ENST00000616574 68 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 AC127459.3-201ENST00000624328 466 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 Z99571.1-201ENST00000636677 394 ntBASIC5.26□□□□□ -1.57
USP3Q9Y6I4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.26□□□□□ -1.57
USP3Q9Y6I4 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.33-201ENST00000362591 102 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 Y_RNA.458-201ENST00000384240 102 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 MIR521-1-201ENST00000384902 87 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 MIR550A3-201ENST00000390735 95 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL603910.2-201ENST00000407268 136 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 MIR548I2-201ENST00000408348 149 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL139156.1-201ENST00000412785 841 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 EI24P1-201ENST00000416584 867 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 HSPD1P21-201ENST00000436541 245 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC087190.1-201ENST00000484462 480 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC107032.1-201ENST00000485945 480 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC093023.1-201ENST00000547375 507 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL442163.3-201ENST00000554110 156 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 BNIP3P5-201ENST00000562290 498 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 SNORD84-203ENST00000584275 78 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC011487.3-201ENST00000593607 453 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC073410.2-201ENST00000603240 332 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 AC009314.1-201ENST00000603871 304 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 LINC02555-201ENST00000563933 1951 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.25□□□□□ -1.57
USP3Q9Y6I4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP3Q9Y6I4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC119751.6-201ENST00000416712 186 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.24□□□□□ -1.57
USP3Q9Y6I4 OR2AM1P-201ENST00000422137 422 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 AL451062.2-201ENST00000427515 271 ntBASIC5.24□□□□□ -1.57
USP3Q9Y6I4 RN7SL319P-201ENST00000480656 221 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms